Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00098 ATGACCTCGAAAATCTCTACAATTCAAGTGACTCTCCTATTAGCCTACCTAACAACCCAAGTTGTTTTATCTGATGACAATGTGCCAATACCAGCTAACAAGGCAGAATTGGACTCATGGTTTAAAACTAATGTGGGGCCTTTAGATCAAAGAAAGACAACCTTGGACCCAAAATTGGTGGCCGCTGAAGAAGGTGCTAAGGTTGTCAAGGTAATGAAAGATGGTAGTGGAGAATTTAAAACCATCACTGATGCCATTAAGAGTGTGCCTGATGGGAACACCAAGCGTGTAATTTTTTACATTGGAGCTGGAAATTATAATGAAAAAATCAAAATTGAGAAAACAAAGCCTTTCATAACCTTGTATGGGTCACCACAGAATATGCCAAACATAACCTTTGCAGGAACGGCTAAAACATATGGAACTGTTGATAGCGCTACATTAATTGTTGAATCAGATTACTTTGTGGCAGCTAACATCATTATCTCGAACTCTGCACCTAGACCTGACGGAAAAATGGTAGGAGCTCAAGCAGTTGCATTGAGGATTTCTGGTGACAAAGCAACATTTTATAATTGCAAGTTTTATGGCTTCCAAGACACAGTGTGTGATGATAGGAATAAACATTTTTTCAAAGACTGCGTAATTCATGGCACTATGGATTATATTTTTGGAAGTGGGAAGTCACTATATTTGAAGAATGAGTTGAGAACACTTGGCGAGGATAAGGTTACAGTTATAGTGGCACAAGCAAGAAAAAGTGAGACAGAGGACAATGCTTACATATTTGTACATTGTGACGTTACTGGAACTGGGAATGAAACTTTCTTAGGGAGAGCATGGATGACTCATCCAAAAGTGGTCTTTGCTTACTCAACCATGAGTAACGTTGTAAAAAAAGAAGGATGGAGTAACAATAATAACCCTGCAGCTGACAAAACTGTACGATTTGGAGAGTATAAGAACACAGGACCTGGTGCAGATCCCAAAGGTCGTTCTCCTTTAGCTCATCAACTAACTGATGAGGAGGTCAAACCTTACATAACTCTTGGTGTGATTGAAGGATCCAAATGGCTACTTCCTCCTCCAACTCCCAAAATATGA 1104 0.3949 MTSKISTIQVTLLLAYLTTQVVLSDDNVPIPANKAELDSWFKTNVGPLDQRKTTLDPKLVAAEEGAKVVKVMKDGSGEFKTITDAIKSVPDGNTKRVIFYIGAGNYNEKIKIEKTKPFITLYGSPQNMPNITFAGTAKTYGTVDSATLIVESDYFVAANIIISNSAPRPDGKMVGAQAVALRISGDKATFYNCKFYGFQDTVCDDRNKHFFKDCVIHGTMDYIFGSGKSLYLKNELRTLGEDKVTVIVAQARKSETEDNAYIFVHCDVTGTGNETFLGRAWMTHPKVVFAYSTMSNVVKKEGWSNNNNPAADKTVRFGEYKNTGPGADPKGRSPLAHQLTDEEVKPYITLGVIEGSKWLLPPPTPKI 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00098 367 SUPERFAMILY Pectin lyase-like 66 361 IPR011050 -
Cca02g00098 367 PANTHER PECTINESTERASE 63-RELATED 34 360 - -
Cca02g00098 367 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 34 360 - -
Cca02g00098 367 Pfam Pectinesterase 69 347 IPR000070 GO:0030599|GO:0042545
Cca02g00098 367 Gene3D - 64 362 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00098 Cca-Chr2 1825989 1827969 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00098 13 363 Carbohydrate Esterase AT1G69940 57.550 3.22e-149 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00098 K01051 - gmx:100775404 621.313