Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00095 ATGGCTGAAGAAGAAGTTTCCATAACGTCACCACCGCCGGGAACGTTACACAAGTATCTCTACCGGAACGGAAGAGCCGTCATCGCCGCGCAGCCTCTCACGGTGGTCCGCTCCGCCACCAGCACCGGCGGCGCGCGCGTCCTCGCTGAAccaccgccgccgccgccgcACGAAGAAGAAGGACAAGGCGAAACCGGCTTCGACGTCGCTCAGCCGCAGCAACGGCAGGGGTTTTCGTTCGACGAGTTTCTGAAGGCGACGAAGGCGAAGGTGGCGACCGAAGAGGAGGCTCTGAAGTCCATGGCGCCggtggtggaggtggaagaagaggaggagggagaggaagtggagTCGTCACCGGTTCAGCCGGTGGCGAAAGAAGCGCGACCGGTTCGACCGGTGGAGGGAGAAGCGCGACCGGTTCGACCGGTGGAGAGAGAAGTGGTTACCGATGACGTGGAGGTGGTGGAGGTGCGTGGGGTTCCGGAAAAGAGGAAGGTTCCGAATGTGGAGGATGGGGAGTTTCCGGAAGAGGCTGGGTGGTCGTTGGTGGAGAGAAAGGTTGAGGTTGCGGTTTCGACGGCCAGGGGAGTTATGAGATTGGTGGACAATGAAATCGTTCATTTCAACTTTCCTCTTCCCATGCACTCTACCAAGTTTCGGTGGATCGTTCGCATCTCAACCAAGCGTTCCGGAGAGGTTGGGAGGATGCCAATGGAATGGGCAAAGATTGTGATTCCGCTAATGCAATCTGGAAAGGTTAAGGTTCGGGCCCGGTGCATTGCTGCACCAGAAAAACTGCAAATGATGCAAGAGATTATGTTGTTAGTGAGCTTTTATATTCACCACTCTGTATTTGCTGAGCGTGTTGATACCGCTTGGAGGCTAGAGGCTTGTGGTAAAATTGATGATACTGCAGAATTCACTCCTGAGGATATAGATTCTCGGAAGCGATTTCTCTATCCAAAGGCTGATCCAGATGAAGCTGCAGCATTGCCTCTGATCAAGCGAAGAAAGGGTGGTGAGCCCTTTCCAGAGCAAAATAATGATGAACAAGCTCTTTCAGAATCAGCATTAAATAAACTTGTTGGAGCTGGAGAAATCTATGACCTAAAGGAGAAGGAAGCCCCAAAGGCACTTGTGTGTAAGCTAAAGCCTTACCAGAAGCAAGCCTTGTTTTGGATGTCGGAAATTGAGAAAGGAATGGATGTTGGGAGTGCAGAGAGAAATTTGCATCCCTGCTGGTCAGCCTACACTATATGCAAGGGAAGGACAATTTATGTGAACATCTTTACTGGAGAGGCTTCGAAAAAATTCCCGAAGTCAACGCTGATGGCAAGAGGAGGAATTCTAGCTGATGCAATGGGACTTGGTAAGACTGTTATGACAATTGCTCTGATACTCAGTAACCCAGGCAGGGGCAACTCAGAAAACAAGGATGTAGAGAATGGAGATGATAATATTATCGCAAAAAAAGGGATGAATGGTAACACCTTGCATAAAGTGGAGGGTGGAACTCTTATTGTTTGTCCCATGGCTTTGTTAAGTCAATGGAAGGATGAACTTGAAACACATTCAAAGCCAGATAGTATATCCATATTTGTTCATTATGGTGGTGGAAGAACCAATGATCCCTTGTTGATCTCAGGGCATGATGTTGTCTTAACAACGTATGGTGTCCTATCAGCTGCTTACAAAAATGATGGAGAGAATAGCATCTATCACAGGGTCCATTGGTACAGGGTGGTGCTAGACGAAGCTCATAATATAAAAGCCCATAGAACTCTGAGTGCCCAGGCTGCTTTTACTCTGTCCTCATACAGCCGCTGGTGTCTTACTGGAACTCCACTTCAGGCTAGTATTTTTTACTTGGAAGACCTATACAGTCTCTTGTGTTTCTTGCGTGTTGAACCTTGGTGCAACTGGGCATGGTGGCACAAGTTAGTTCAAAGGCCTTATGAGAATGGTGATCCAAGATCCCTGAAATTGGTCAAGGCCATTTTGAGGATGATAATGCTAAgaagaacgaaggaatcgaaggataaggaaggaagGCCTATACTTTTCCTTCCACCAATTGATATTAAATTGATCGAGTGTCAACAGACAGAATCTGAACGGGACTTCTATGAAGCCCTTTTTGTGAGATCTAAAGGTCAATTTGATCAGTATGTTGCACAAGGCAAGGTTCTTCACCATTATGCGAATATCCTTGATCTACTAATGCAGTTGAGACGGTGTTGTAACCATCCATTTTTGGTTATGTGCGGAAGCGATTCCCAGAAATATGCAGACTTGACCAGACTCGCAAGAAGATTCCTTCAGTCTAATACTGAATCCCCCGGGGCAAGCAATCAAAACGATCTTCAACATGCAGAGTTGAACAAACTTGCAAGTAGATTGCTTCTACATTCTGCTTCTTCTTCGCACTCTATCCAACCTCGTGCATACATTGACGAGGTTTTGGAGCATATTCAAAAGGGTGACACCGTAGAATGCTCTTTATGTATGGAATCTCCGGAAGATCCTGTGTTTACACCATGTGCCCATAAATTTTGTAGAGAATGTATATTCAGTTGCTGGGGCACCTCAGCGGGTGGCAAATGTCCAATCTGTCGTCAATTGCTCCAGAAAGACGATCTGATTACTTGTCCATCTGAAAGCCCATTCAAGGTCGATATTAAGAACAATGTGACAGAGTCTTCAAAGGTTTCAAAGCTACTGGAATTCCTGCAACGTATTCTGAACTCATCCTCAAGTGAAAAGAGTATTGTCTTCAGTCAGTGGACTTCATTTTTTGATCTGTTGGAGAATCCATTAAGGAGGAGAGGAATTGGCTTTTTGAGATATGATGGGAAATTGACTCAGAAACAGAGGGAGAGAGTTCTGGATGAATTCAATGAGACAACAGAGAAAAGGGTTTTGTTGATGTCACTAAAGGCTGGTGGCGTTGGACTGAACTTAACTGCAGCATCAAATGTTTTCATTATGGATCCATGGTGGAATCCTGCAGTTGAAGAGCAAGCAATAATGAGAATTCATCGCATAGGACAAAAACGAAGTGTAATTGTCAGAAGATTCATTGTGAAGGACACAGTGGAAGATCGTTTGCAAAAAGTACAAGCAAGGAAACAAATGATGATATCGGGTGCCCTCACCGACGATGAAGTTCGGAATGCTAGGATTCAAGACCTCAAAATGCTTTTCACATGA 3213 0.4448 MAEEEVSITSPPPGTLHKYLYRNGRAVIAAQPLTVVRSATSTGGARVLAEPPPPPPHEEEGQGETGFDVAQPQQRQGFSFDEFLKATKAKVATEEEALKSMAPVVEVEEEEEGEEVESSPVQPVAKEARPVRPVEGEARPVRPVEREVVTDDVEVVEVRGVPEKRKVPNVEDGEFPEEAGWSLVERKVEVAVSTARGVMRLVDNEIVHFNFPLPMHSTKFRWIVRISTKRSGEVGRMPMEWAKIVIPLMQSGKVKVRARCIAAPEKLQMMQEIMLLVSFYIHHSVFAERVDTAWRLEACGKIDDTAEFTPEDIDSRKRFLYPKADPDEAAALPLIKRRKGGEPFPEQNNDEQALSESALNKLVGAGEIYDLKEKEAPKALVCKLKPYQKQALFWMSEIEKGMDVGSAERNLHPCWSAYTICKGRTIYVNIFTGEASKKFPKSTLMARGGILADAMGLGKTVMTIALILSNPGRGNSENKDVENGDDNIIAKKGMNGNTLHKVEGGTLIVCPMALLSQWKDELETHSKPDSISIFVHYGGGRTNDPLLISGHDVVLTTYGVLSAAYKNDGENSIYHRVHWYRVVLDEAHNIKAHRTLSAQAAFTLSSYSRWCLTGTPLQASIFYLEDLYSLLCFLRVEPWCNWAWWHKLVQRPYENGDPRSLKLVKAILRMIMLRRTKESKDKEGRPILFLPPIDIKLIECQQTESERDFYEALFVRSKGQFDQYVAQGKVLHHYANILDLLMQLRRCCNHPFLVMCGSDSQKYADLTRLARRFLQSNTESPGASNQNDLQHAELNKLASRLLLHSASSSHSIQPRAYIDEVLEHIQKGDTVECSLCMESPEDPVFTPCAHKFCRECIFSCWGTSAGGKCPICRQLLQKDDLITCPSESPFKVDIKNNVTESSKVSKLLEFLQRILNSSSSEKSIVFSQWTSFFDLLENPLRRRGIGFLRYDGKLTQKQRERVLDEFNETTEKRVLLMSLKAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQKRSVIVRRFIVKDTVEDRLQKVQARKQMMISGALTDDEVRNARIQDLKMLFT 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00095 1070 Pfam HIRAN domain 198 275 IPR014905 GO:0003676|GO:0008270|GO:0016818
Cca02g00095 1070 MobiDBLite consensus disorder prediction 102 132 - -
Cca02g00095 1070 SMART HIRAN_2 172 281 IPR014905 GO:0003676|GO:0008270|GO:0016818
Cca02g00095 1070 Pfam Zinc finger, C3HC4 type (RING finger) 831 876 - -
Cca02g00095 1070 Gene3D - 691 1070 IPR027417 -
Cca02g00095 1070 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 788 896 IPR013083 -
Cca02g00095 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 687 1059 IPR027417 -
Cca02g00095 1070 CDD SF2_C_SNF 895 1028 - -
Cca02g00095 1070 SMART ultradead3 380 656 IPR014001 -
Cca02g00095 1070 Gene3D - 437 676 IPR038718 -
Cca02g00095 1070 SMART ring_2 833 872 IPR001841 -
Cca02g00095 1070 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 271 1069 - -
Cca02g00095 1070 Pfam Helicase conserved C-terminal domain 908 1017 IPR001650 -
Cca02g00095 1070 ProSitePatterns Zinc finger RING-type signature. 848 857 IPR017907 -
Cca02g00095 1070 ProSiteProfiles Zinc finger RING-type profile. 833 873 IPR001841 -
Cca02g00095 1070 SMART helicmild6 934 1017 IPR001650 -
Cca02g00095 1070 CDD DEXDc_SHPRH-like 384 675 - -
Cca02g00095 1070 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 440 634 IPR014001 -
Cca02g00095 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 675 IPR027417 -
Cca02g00095 1070 PANTHER DNA REPAIR PROTEIN RAD5B 271 1069 - -
Cca02g00095 1070 MobiDBLite consensus disorder prediction 41 69 - -
Cca02g00095 1070 Pfam SNF2-related domain 387 753 IPR000330 GO:0005524|GO:0140658
Cca02g00095 1070 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 906 1066 IPR001650 -
Cca02g00095 1070 SUPERFAMILY RING/U-box 829 883 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00095 Cca-Chr2 1791287 1798052 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00095 104 1069 RAD5 or RAD16-like Gene Family AT5G43530 57.974 0.0 1157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca02g00095 SNF2_N 2.5e-73 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00095 K15505 - gmx:100806677 1677.53