Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00088 ATGGATTCCTTAGAAGACACCGCCTGTTGGGATTTTCTCGATTACTCTTTCATCGATCAAGCGCCCCCTGATTTCCTTTGGTCCAATCATAGTGTGAGCACCGAAATTGACATTCCAGGTGATGCTGTTGCTTGTCCAGAGAACACTAAGAAGAGGGGGCGCACTGATTCATGCTTCAAAGCGGGATCAAAAGCTTGCCGTGAGAAATTGCGGAGGGAGAGACTCAATGAAAGGTTCTGTGACTTGAGCGCTATTTTGGAACCTGGGAGACCTGTGAGAACAGATAAACCAGCTATACTTGATGATGCTATCAGAGTTTTGAGCCAACTTAAAACCGAATCTGAGGAGCTCAAAAAATCTAATGAAAAATTATTAGAGGAAATAAAATGTTTAAAGGCAGAGAAAAATGAACTTCGTGAAGAGAAACTTGTGCTGAAAGCAGACAAGGAAAGGATTGAGAAGCAGTTGAAAGGCATGGCCGTTGCACCAGCAGGGTTTATGGCTCCCCCTGTAgctgctgctgctgctgcATATCAAGCAGGGATGAACAAGATGGCTGTTTATCCAAACTATGGCTATATCCCAATGTGGCAATATCTTCCTCCATCTTCCAGAGATACATCTCATGATCATGAGCTCAGGCCTCCTGCTGCATAG 657 0.4292 MDSLEDTACWDFLDYSFIDQAPPDFLWSNHSVSTEIDIPGDAVACPENTKKRGRTDSCFKAGSKACREKLRRERLNERFCDLSAILEPGRPVRTDKPAILDDAIRVLSQLKTESEELKKSNEKLLEEIKCLKAEKNELREEKLVLKADKERIEKQLKGMAVAPAGFMAPPVAAAAAAYQAGMNKMAVYPNYGYIPMWQYLPPSSRDTSHDHELRPPAA 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00088 218 PANTHER TRANSCRIPTION FACTOR BHLH104 1 218 - -
Cca02g00088 218 CDD bHLH_AtILR3_like 64 139 - -
Cca02g00088 218 Pfam Helix-loop-helix DNA-binding domain 63 110 IPR011598 GO:0046983
Cca02g00088 218 PANTHER BHLH TRANSCRIPTION FACTOR 1 218 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cca02g00088 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 137 IPR036638 GO:0046983
Cca02g00088 218 SMART finulus 65 116 IPR011598 GO:0046983
Cca02g00088 218 Gene3D - 63 160 IPR036638 GO:0046983
Cca02g00088 218 Coils Coil 100 155 - -
Cca02g00088 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 59 110 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00088 Cca-Chr2 1647196 1651385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00088 49 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 65.497 5.77e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca02g00088 HLH 2.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00088 - - gmx:100787583 349.362