Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00086 ATGGATTTTGTGAACCAAAGACACCTACTCTATATGCCACATGCTAATCCCCCACCAATTCCTCATACTGCAACACATTCTTCTCTTACAAATTTTCCCCTCATAGAAATCCTTCTTATAGGAATGGTGGTTTCATCTTTGTTCCTTTTACTCTACTACATGTTGGTTCTCAAGTGCTGCCTCAATTGGCACCATGGTCATCATGCAAGACTTTTTTCTCGATCCTGGTATGGTGCTGAAGACCCTTCTGCACCATACCCAACAGCATCAGATTCAGAGCCTAGAGGGCTAGAGGAAGCAGTGATTAAGTTGATTCCAGTGATTCATTACAAGCCAGAAGAAGAAGGGTACACAGAGTTTGGTGAAAGAGCCTCTAGTGAGTGTGCTGTTTGTTTGAGTGAATTTCAGCAAGATGAGAAGCTCAGGGTTCTACCAAATTGTAGCCATGTCTTTCACATTGATTGCATAGATGTTTGGCTTCACAACAATGCTCATTGCCCTCTTTGTAGAGCAAGTGTTTCCTTGATGACAAGCCGAGTCCATGTTGTTGACCAAGTCCAACTTCTCACTCCAAGGCCCTCCCCACAAGACCAAAGCCAAAACATTGATGAAAACCTCATTGATGAAGGTTTTGTTGTAATTGATTTAGATAGtgaacatgaacttgaacttgaacatgaacaagaCTTACAAGGAAGACAAGAAGAGTTAACATGTTCTATAAGTGATTCTTCACAAAGGAGGTTATTGGAGGAGAAGATTGCAAGGAAGCTTCAAAAAGTGACCAGCTTGAGAGATGAGTGTATTGATATTAGAGCCAAAGATGAAGGATTCTCAGTTCAGTTAGCCATGAGAAGGTCTTTCTCAATGGATTCATCGGTGGATAGACAATTCTATGGGGCAGTTCAACAGGCTTTACAGCAACAAAATGGACATGTCAATGAGGTCAACACAATTGAGGCTTGTGGTGGAAGTGGTAGAGTCAAGAGATCATTCTTTTCTTTTGGACATGGAAGCAGATCAAGAAATGCTGTATTACCTGTTTATTTGGACCCCTGA 1059 0.4032 MDFVNQRHLLYMPHANPPPIPHTATHSSLTNFPLIEILLIGMVVSSLFLLLYYMLVLKCCLNWHHGHHARLFSRSWYGAEDPSAPYPTASDSEPRGLEEAVIKLIPVIHYKPEEEGYTEFGERASSECAVCLSEFQQDEKLRVLPNCSHVFHIDCIDVWLHNNAHCPLCRASVSLMTSRVHVVDQVQLLTPRPSPQDQSQNIDENLIDEGFVVIDLDSEHELELEHEQDLQGRQEELTCSISDSSQRRLLEEKIARKLQKVTSLRDECIDIRAKDEGFSVQLAMRRSFSMDSSVDRQFYGAVQQALQQQNGHVNEVNTIEACGGSGRVKRSFFSFGHGSRSRNAVLPVYLDP 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00086 352 Pfam Ring finger domain 127 170 IPR001841 -
Cca02g00086 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 175 IPR013083 -
Cca02g00086 352 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Cca02g00086 352 SMART C1_4_2 127 171 IPR004595 GO:0006281|GO:0008270
Cca02g00086 352 PANTHER RING-H2 FINGER PROTEIN ATL16 20 351 IPR044600 GO:0016567|GO:0016740
Cca02g00086 352 Coils Coil 247 267 - -
Cca02g00086 352 SUPERFAMILY RING/U-box 127 178 - -
Cca02g00086 352 SMART ring_2 128 169 IPR001841 -
Cca02g00086 352 CDD RING-H2_PA-TM-RING 127 170 - -
Cca02g00086 352 PANTHER RING-H2 FINGER PROTEIN ATL16 20 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00086 Cca-Chr2 1611511 1613065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00086 25 352 C3H Transcription Factor Family AT1G04360 40.678 2.07e-69 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00086 - - gmx:100814827 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02197 03 42704323 42705222 Cca02g00086 02 1611511 1613065 PCT