Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00085 ATGGATGAAGGGGGTTCAAGAGGAAAAGGCAAGGATGAAGAAGAGCATGTTAAGTACAGAGGGGTACGTAGGAGGCCATGGGGAAAATTTGCAGCAGAGATTCGTGACTCATTGAGACATGGTCAAAGGTTGTGGCTAGGAACTTTCAACACAGCAGAGGAAGCAGCTAGAGCCTATGATAGAGCTGCTTATGCCATGAGGGGTCCCTTTGCAGTCCTCAATTTCCCTCATGAGTACCctccttcagctgcttcttcttcttcttcttcttcttctAATGCTtcttcatcttcatcttcatcttcagcttcatcttcagcttcGGCTTCAGCTTCGTCAGCATCTGCACCCTCTTCAAGTCTTGCAAGAGGAAGCAATGAGCAATCTAATCAAGTGTTTGAGTTTGAGTACTATGATGAGAAGTTGTTGGAAGAGCTTCTTGGTTATGAAGAGAAAACTAAACATGACAAGTGA 474 0.3776 MDEGGSRGKGKDEEEHVKYRGVRRRPWGKFAAEIRDSLRHGQRLWLGTFNTAEEAARAYDRAAYAMRGPFAVLNFPHEYPPSAASSSSSSSSNASSSSSSSSASSSASASASSASAPSSSLARGSNEQSNQVFEFEYYDEKLLEELLGYEEKTKHDK 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00085 157 MobiDBLite consensus disorder prediction 80 128 - -
Cca02g00085 157 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Cca02g00085 157 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Cca02g00085 157 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Cca02g00085 157 MobiDBLite consensus disorder prediction 1 20 - -
Cca02g00085 157 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Cca02g00085 157 PANTHER DNA-BINDING DOMAIN 12 103 IPR044808 GO:0003700|GO:0009873
Cca02g00085 157 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Cca02g00085 157 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Cca02g00085 157 SUPERFAMILY DNA-binding domain 18 78 IPR016177 GO:0003677
Cca02g00085 157 MobiDBLite consensus disorder prediction 76 128 - -
Cca02g00085 157 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Cca02g00085 157 PANTHER OS09G0571700 PROTEIN 12 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00085 Cca-Chr2 1584886 1585359 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00085 13 154 AP2-EREBP Transcription Factor Family AT3G23230 50.704 4.40e-39 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca02g00085 AP2 8.8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00085 - - gmx:100781117 172.17