Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00083 ATGGATTGTTCTTCCATTCTTCAATCTTCAAATTCTTCACTCTCCTCAGAATCCTCATTGGGGTCCCCTCATCACCACCTCCCCTTCAACGAAAACGATCCCGAGGAGATGCTTCTCTACGGCATGATCACATCACACCAAGAAGGAACTCGCCCACGCAAAGTAATCAAAGAAGAGGAGGTGAACTCcaacaacaacaaacacaataacaacaacaataacaataaGAGCTTCCGCGGCGTGCGGAAGCGGCCGTGGGGGAAATTTGCGGCCGAGATAAGAGACTCCACCCGGCACGGCATGAGAGTGTGGCTTGGTACGTTCGACAGCGCCGAAGCCGCGGCGCTGGCGTACGACCAGGCCGCATTCTCGGTTAGAGGCTCTAACGCCGTGCTCAATTTCCCCGTTGAGAAGGTGAAGGAGTCTCTAAGGGACATGAATTGTAGCCAAGATGGGTGCTCCCCCATTGTGGCTTTGAAGAGGAGACACTCCCTTGGACGCAAAATGGCTGCCAAAAAGAAGAAGGAGGAAGAAGAGAGTGATGGTGTTAGGCTAGAGAATGTGGTTGTGTTGGAGGACTTGGGGGCAGAGTATTTGGAACACTTGTTGATGATGTCCTCCAATGATACTAGATGCACTTGGTGA 645 0.493 MDCSSILQSSNSSLSSESSLGSPHHHLPFNENDPEEMLLYGMITSHQEGTRPRKVIKEEEVNSNNNKHNNNNNNNKSFRGVRKRPWGKFAAEIRDSTRHGMRVWLGTFDSAEAAALAYDQAAFSVRGSNAVLNFPVEKVKESLRDMNCSQDGCSPIVALKRRHSLGRKMAAKKKKEEEESDGVRLENVVVLEDLGAEYLEHLLMMSSNDTRCTW 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00083 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 18 205 - -
Cca02g00083 214 MobiDBLite consensus disorder prediction 1 25 - -
Cca02g00083 214 CDD AP2 78 136 IPR001471 GO:0003700|GO:0006355
Cca02g00083 214 MobiDBLite consensus disorder prediction 65 79 - -
Cca02g00083 214 Pfam AP2 domain 78 127 IPR001471 GO:0003700|GO:0006355
Cca02g00083 214 PANTHER DNA-BINDING DOMAIN 18 205 IPR044808 GO:0003700|GO:0009873
Cca02g00083 214 Gene3D AP2/ERF domain 76 137 IPR036955 GO:0003700|GO:0006355
Cca02g00083 214 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Cca02g00083 214 PRINTS Ethylene responsive element binding protein signature 117 137 IPR001471 GO:0003700|GO:0006355
Cca02g00083 214 SMART rav1_2 77 141 IPR001471 GO:0003700|GO:0006355
Cca02g00083 214 MobiDBLite consensus disorder prediction 1 32 - -
Cca02g00083 214 ProSiteProfiles AP2/ERF domain profile. 77 135 IPR001471 GO:0003700|GO:0006355
Cca02g00083 214 SUPERFAMILY DNA-binding domain 78 137 IPR016177 GO:0003677
Cca02g00083 214 MobiDBLite consensus disorder prediction 60 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00083 Cca-Chr2 1518332 1519178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00083 6 214 AP2-EREBP Transcription Factor Family AT3G23240 51.556 2.07e-70 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca02g00083 AP2 3.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00083 K14516 - gmx:100780576 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02199 03 42723042 42723908 Cca02g00083 02 1518332 1519178 PCT