Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00075 ATGGTTAGGGCTCCTTGTTGTCAAAAGATGGGATTGAAGAAGGGTCCTTGGACCCCAGAGGAAGATCAAATCCTCATGTCATACATCCAAAAATATGGCCATGGCAACTGGCGTGCCCTCCCAAAACTTGCAGGGCTATTGAGGTGTGGAAAGAGCTGCAGACTAAGGTGGATTAACTATTTAAGGCCTGATATCAAGAGAGGAAATTTCTCGAGTGAAGAAGAGGAAATTATCATTAAGATGCACCAGTTGCTGGGCAACAGGTGGTCAGCAATAGCAGCAAAACTACCTGGAAGAACCGACAATGAAATAAAAAATGTGTGGCACACTAACTTGAAGAAGAGACTATTGAATTCATCAGATACCAAAAGAGTTTCCAAGCCAAGAATGAAACGATCCAATTCCAATTCCAGCACACTAACAACATCATCATCAGCATGCACATCTTCCAGTGATTTTTCATCATTCAGCGAAGGAACTAATAAGAGCACGATGACGATGGACAACAACATTAACATCATCAAGAGTGAAGACATAGAGTCTGTGGAGACCATGCCTCCAATTATTGATGAAAGCTTTTGGTCAGAGGCAACAGTGGTGGATGATGAAACCTCCACCATGCCATCAAATTCTTGGACAATTTCAAATGAATTAGAATTAGTACCTCCTCAAAATCAAATTAATTCAGTGGAAACCATCCAACACAGTTATGATTATAATGGCTCAAACTTTGATGATGGCATGGATTTCTGGTATGACTTGTTCATAAGATCGGGGGAGTCAATAGAATTGCCAGAGTTCTGA 804 0.4104 MVRAPCCQKMGLKKGPWTPEEDQILMSYIQKYGHGNWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFSSEEEEIIIKMHQLLGNRWSAIAAKLPGRTDNEIKNVWHTNLKKRLLNSSDTKRVSKPRMKRSNSNSSTLTTSSSACTSSSDFSSFSEGTNKSTMTMDNNINIIKSEDIESVETMPPIIDESFWSEATVVDDETSTMPSNSWTISNELELVPPQNQINSVETIQHSYDYNGSNFDDGMDFWYDLFIRSGESIELPEF 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00075 267 MobiDBLite consensus disorder prediction 131 161 - -
Cca02g00075 267 Gene3D - 13 66 - -
Cca02g00075 267 CDD SANT 69 112 IPR001005 -
Cca02g00075 267 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Cca02g00075 267 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca02g00075 267 CDD SANT 16 61 IPR001005 -
Cca02g00075 267 SMART sant 66 114 IPR001005 -
Cca02g00075 267 SMART sant 13 63 IPR001005 -
Cca02g00075 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Cca02g00075 267 Gene3D - 68 141 - -
Cca02g00075 267 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Cca02g00075 267 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca02g00075 267 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca02g00075 267 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 258 - -
Cca02g00075 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Cca02g00075 267 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 258 - -
Cca02g00075 267 MobiDBLite consensus disorder prediction 119 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00075 Cca-Chr2 1330541 1333470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00075 1 267 MYB Transcription Factor Family AT2G31180 50.000 3.98e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca02g00075 Myb_DNA-binding 2.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00075 K09422 - gmx:100794205 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02206 03 42843285 42845452 Cca02g00075 02 1330541 1333470 PCT