Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00072 ATGAAGGAAGATGGAATGGCAGATCCTGAGAGTTATGGGAGTCATGAGCGTGATATTGAGCAAGCATTGATTGCTTTAAAAAAGGGCACTCAGCTAGTAAAGTATTGTCGAAAAGGGAAGCCAAAATTTTGTTCATTCAGGCTCTCATCGGATGAAACAAAACTGATTTGGATTTCTCATGGAAAGGAAAAGTGTCTAAAATTGTCTTCTGTTTCACACATCATCCCTGGACAGAGAACAGCTGTCTTTAACAGATACTTGCGCCCTGAAAAGGATTATCTGTCATTTTCACTTATTTATAAAAAGGGGGAACGATCACTTGATCTGATCTGCAAGGACCAAGCAGAGGTAGAGGTATGGTTTTCAAGCCTTAAGGCATTAATTTCCACTGGAGAGCGTATTAGGCATGGAACAAGTGATTTAACCAATGATAGTGGTGACTCTGTTCACTCTAGTCGCTCTGCTCCAAATGATCGTCCTCATGCTGGAACACTAGAGTATGCATCAAGCGTTGCCCGTGGCAGGTTTTCATTTGAATCGGTGTCTCATGAATCTACATCTTCTGGGTCAAGATCAGATGCTAGTATGCCACTAAGGACAAGCGTTGGAGATGGTGCTCGTGTTAGTGTATCAAGTATTAGCCACTCAAGTAGTGTAGGATCAGGATCAGGAATAGATGACATAGAATCGCTAGGTGATGTTTATGTATGGGGAGAAGTTTGGGCAGATGGAATACCATCTGATGGATTGGGGAGTCAGACCCCTCTTAAGACAGATGTGCTGATTCCTAAGTCATTAGAGTCTGATGTTGTTCTTGATGTTCATCAAATTGGGCCTGGTGTACGTCATGTTGCTCTAGTTACAAGGCAAGGGGAGGTTTTTACTTGGGGAGAGGACTCTGGTGGAAGACTTGGTCATGGGTTTGAAAAAGATTTTGGCCGACCTCATCTTGTGGAGTCCCTGGCAGTTACTAATGTGAGTTATGTTGCATGTGGTGAACATCATACATGTGCTGTGTCTGCATCTGGTGACCTATTCACCTGGGGTGATGGTACACATTGTGCAGGACTTCTTGGTCATGGAAGTGATGTTAGCTACTGGACACCAAAGAGGGTTAGTGGCCCTTTAGAGGGACTTCAGGTTGTATCTGTAGCATGTGGCACATGGCATTCAGCATTAGCAACCTCTTATGGGAAATTGTTTACCTTTGGTGATGGAAAATTTGGTGTATTGGGCCATGGAGATCGAGAGAGTGTGCCATATCCAAAGGAGGTACAATTATCGAGTGGACACAAGACTATTAAGGTTGCATGTGGAGTGTGGCACACAGCTGCTATTGTAGAGGTTACTGATCCACCTAGTTCAAATGCTTTGTCCAGGAAGCTCTTCACATGGGGTGATGGTGACAAATATCGCTTGGGTCATGTTAACAAGGAAACTTACCTTAAACCAACTTGTGTAGCTGCACTTGCTGAATATAGTTTTCAGCAGATTGCATGTGGGTACACTATGACTGTTGCACTCACGGCATCTGGTCATGTTTTCACTGTCGGAGGCACAACATATGGTCAATTAGGAAATCCAATGTCTGATGGAAAAGTTCCAATTCTAGTCCGAGACAAGTTATTAGGCGAGTTTGTTGAGGAAATATCATGTGGTGCACATCATGTAGCTGTATTGACTTCAAGAAGTGAACTATATACTTGGGGGAGAGGTGCCAATGGAAGATTAGGACATGGAGACACGGAAGACCAGAAAACTCCAACATTGGTGGAAGCATTGAAAGACAGGCATGTTAAGAATATCTCATGTGGCTCGACCTTTACATCTTGTATATGCCTACATAAATGGGTTTCTGGAGTTGATCAATCTGTTTGCTCTGATTGTCGACAACCATTTGGTTTTACTAGAAAAAGGCATAATTGTTATCATTGTGGAATTGTGTTCTGCCATCCTTGTAGTTCAAAAAAAGCCTTGAGAGCAGCACTGGCTCCAACACCTAGCAAACCACATCGCGTGTGTGATGCTTGTTATACTAAGCTAAAAGGTTCTGATAGTTCTTCCAATTTTAATAGAGAAATTACTCGTCCTTCTAGTTCCATAAGTGGAAGGGAAAGATTTGACAGGGGAGAGATAAAGTCTTCAAGAGTTCTCTTGCCTTCCATCACAGAACCGGTAAAATACCTTGAGATTAGGAGTAATAGGCCTGGAAGTACACATGACTCCTCTTCCATAGTCCGAGCTGCTCAAGTTCCTTCAAGTTTACAATTAAAAGATGTAACATTTCCAAGTTCATTGAGTTCTGCCCAGAATTTATTCAAGCTTGTTATACCGTCAAGTCAACCTCCAACTCCACCAACACCAGCTACTTTGAGACCTATGTCACCATATGCTAAAAGACCACCAAGCCCACCACGTTCTACCTCCCCTGGATTTTCAAGAAGCCTTGTTGATAATTTAAAGAGGAGAAATGATTATTTGAATCAAGAAGTCTCAAAATTGCACAACAAAAATCGAAGTTTGAGGCAAAAGAGCGAATTGCAAGATATGAAGATTCAGGAGCTTCAGAAACATATTGAAAAAGCCATGTCACAAGTTGGAGAGGAATCTTCTAAGCTTAGAGAAGCAAGGGTATTTATCAAGTCCATGACAGATAAGTTGAGGGAAGTGGCTGAGACGTTGCCACCTGAAATTTCTGATGACGAAACCTTGAGAACAATGCAAGCTCAAGCTGAAGAATTTCTTCTTGAGGAAAAGGATTTTGAATCTTCTTCCTCACCACCAAGGCTTGAGCCTGAGCAACAAAGTGCACCCGATGAAACTGCCTCAAATAGCGACTCTTTGAAACTGCAAGAGCAAAGAATGGAAAGAAATGATGATGCTGCTGGGGCTGCTCCAGGTATAATTGGAGGAAATGTTCTTGAAGAAAGCAACAAATCATCTGTATCTAGTACAGGAGTGCCTCAGCCAACCTCCGGATATGGTTCAAGATTACATGACTCTAGTATACGAGTAAGAGAAGGAGAAAGATCAGTCATTGAACAATTTGAGCATGGTGTTTATGTCACACTCATTGTACTCCCTAGTGGTTCCAAAGTTTTCAAACGAGTTAGATTCAGTAAACGAAGATTCAATGAGCAACAAGCAGCAGAATGGTGGAACCAAAACAAAGATAGGGTGCACAATAAATATAGTGCATGTGCTGAAGATGATAGTGAGGCATTACCCTCTTCCTAA 3237 0.4217 MKEDGMADPESYGSHERDIEQALIALKKGTQLVKYCRKGKPKFCSFRLSSDETKLIWISHGKEKCLKLSSVSHIIPGQRTAVFNRYLRPEKDYLSFSLIYKKGERSLDLICKDQAEVEVWFSSLKALISTGERIRHGTSDLTNDSGDSVHSSRSAPNDRPHAGTLEYASSVARGRFSFESVSHESTSSGSRSDASMPLRTSVGDGARVSVSSISHSSSVGSGSGIDDIESLGDVYVWGEVWADGIPSDGLGSQTPLKTDVLIPKSLESDVVLDVHQIGPGVRHVALVTRQGEVFTWGEDSGGRLGHGFEKDFGRPHLVESLAVTNVSYVACGEHHTCAVSASGDLFTWGDGTHCAGLLGHGSDVSYWTPKRVSGPLEGLQVVSVACGTWHSALATSYGKLFTFGDGKFGVLGHGDRESVPYPKEVQLSSGHKTIKVACGVWHTAAIVEVTDPPSSNALSRKLFTWGDGDKYRLGHVNKETYLKPTCVAALAEYSFQQIACGYTMTVALTASGHVFTVGGTTYGQLGNPMSDGKVPILVRDKLLGEFVEEISCGAHHVAVLTSRSELYTWGRGANGRLGHGDTEDQKTPTLVEALKDRHVKNISCGSTFTSCICLHKWVSGVDQSVCSDCRQPFGFTRKRHNCYHCGIVFCHPCSSKKALRAALAPTPSKPHRVCDACYTKLKGSDSSSNFNREITRPSSSISGRERFDRGEIKSSRVLLPSITEPVKYLEIRSNRPGSTHDSSSIVRAAQVPSSLQLKDVTFPSSLSSAQNLFKLVIPSSQPPTPPTPATLRPMSPYAKRPPSPPRSTSPGFSRSLVDNLKRRNDYLNQEVSKLHNKNRSLRQKSELQDMKIQELQKHIEKAMSQVGEESSKLREARVFIKSMTDKLREVAETLPPEISDDETLRTMQAQAEEFLLEEKDFESSSSPPRLEPEQQSAPDETASNSDSLKLQEQRMERNDDAAGAAPGIIGGNVLEESNKSSVSSTGVPQPTSGYGSRLHDSSIRVREGERSVIEQFEHGVYVTLIVLPSGSKVFKRVRFSKRRFNEQQAAEWWNQNKDRVHNKYSACAEDDSEALPSS 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00072 1078 Gene3D - 18 135 IPR011993 -
Cca02g00072 1078 MobiDBLite consensus disorder prediction 974 998 - -
Cca02g00072 1078 SMART fyve_4 614 683 IPR000306 GO:0046872
Cca02g00072 1078 PRINTS Chromosome condensation regulator RCC1 signature 384 400 IPR000408 -
Cca02g00072 1078 PRINTS Chromosome condensation regulator RCC1 signature 501 519 IPR000408 -
Cca02g00072 1078 PRINTS Chromosome condensation regulator RCC1 signature 400 414 IPR000408 -
Cca02g00072 1078 PRINTS Chromosome condensation regulator RCC1 signature 343 359 IPR000408 -
Cca02g00072 1078 PRINTS Chromosome condensation regulator RCC1 signature 559 580 IPR000408 -
Cca02g00072 1078 PRINTS Chromosome condensation regulator RCC1 signature 293 309 IPR000408 -
Cca02g00072 1078 MobiDBLite consensus disorder prediction 927 949 - -
Cca02g00072 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 460 511 IPR000408 -
Cca02g00072 1078 SUPERFAMILY FYVE/PHD zinc finger 616 687 IPR011011 -
Cca02g00072 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 398 449 IPR000408 -
Cca02g00072 1078 Pfam FYVE zinc finger 616 681 IPR000306 GO:0046872
Cca02g00072 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 564 615 IPR000408 -
Cca02g00072 1078 MobiDBLite consensus disorder prediction 779 808 - -
Cca02g00072 1078 MobiDBLite consensus disorder prediction 136 163 - -
Cca02g00072 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 343 397 IPR000408 -
Cca02g00072 1078 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 18 1068 - -
Cca02g00072 1078 MobiDBLite consensus disorder prediction 918 1002 - -
Cca02g00072 1078 SUPERFAMILY PH domain-like 18 128 - -
Cca02g00072 1078 Coils Coil 817 844 - -
Cca02g00072 1078 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 18 1068 - -
Cca02g00072 1078 CDD PH_PLC_plant-like 17 129 - -
Cca02g00072 1078 MobiDBLite consensus disorder prediction 777 815 - -
Cca02g00072 1078 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 620 682 IPR017455 -
Cca02g00072 1078 MobiDBLite consensus disorder prediction 182 201 - -
Cca02g00072 1078 MobiDBLite consensus disorder prediction 141 158 - -
Cca02g00072 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 565 612 IPR000408 -
Cca02g00072 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 511 560 IPR000408 -
Cca02g00072 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 398 446 IPR000408 -
Cca02g00072 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 462 508 IPR000408 -
Cca02g00072 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 291 339 IPR000408 -
Cca02g00072 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 342 393 IPR000408 -
Cca02g00072 1078 ProSiteProfiles BRX domain profile. 1010 1065 IPR013591 -
Cca02g00072 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 512 563 IPR000408 -
Cca02g00072 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 291 342 IPR000408 -
Cca02g00072 1078 Gene3D - 183 453 IPR009091 -
Cca02g00072 1078 Gene3D - 454 627 IPR009091 -
Cca02g00072 1078 Pfam Transcription factor regulating root and shoot growth via Pin3 1010 1064 IPR013591 -
Cca02g00072 1078 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 436 446 IPR000408 -
Cca02g00072 1078 SUPERFAMILY RCC1/BLIP-II 232 617 IPR009091 -
Cca02g00072 1078 Coils Coil 852 872 - -
Cca02g00072 1078 MobiDBLite consensus disorder prediction 182 197 - -
Cca02g00072 1078 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 628 688 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00072 Cca-Chr2 1258812 1268475 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00072 1007 1065 Major Intrinsic Protein MIP AT1G31880 37.288 2.14e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00072 - - gmx:100778984 1693.71