Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00069 ATGGCTCCGAAGAGAGGTGCGAAACCAGTGGTGGCAGCGAAGAAGAAGCCCGAGAAGGTGACGAACCCGCTCTTCGAGAAGCGTCCGAAGCAGTTCGGAATCGGAGGCGCGTTGCCGCCGAAGCGTGACCTCACGCGCTTCGTCAAGTGGCCCAAGACCGTTCAAATCCAGCGCAAGAAGCGCGTCCTCAAGCAGAGGCTCAAGGTCCCTCCCGCACTCAATCAGTTCACCAAGACCCTCGACAAAAGCCTCGCGACGAACCTGTTCAAGATGCTGCTCAAGTACAGGCCCGAAGATAAAGCGGAGAAGAAGGAGCGTTTGTTGAAGAGGGCCCAGTCTGAGGCTGATGGGAAGCCCGTTGAAGCTAAGAAGCCCATTGTCGTCAAATATGGTCTCAACCATGTTACCTACCTTATTGAGCAGAATAAAGCACAACTAGTTGTGATTGCTCATGATGTGGATCCAATTGAGCTTGTGGTCTGGCTTCCAGCATTGTGCAGGAAGATGGAAATTCCATACTGCATTGTCAAGGGCAAAGCACGATTAGGAACGGTTGTCCACAAGAAAACTGCTTCAGTTTTGTGTTTGACGACTGTCAAGAATGAAGACAAACTGGAGTTCAGTAGAATCCTTGAAGCTATTAAGGCCAACTTCAATGACAAGTATGATGAATACAGAAAGAAGTGGGGTGGTGGGATCATGGGTTCCAAATCCCAAGCCAAGACCCGGGCAAAAGAGAAGCTCCTTGCCAAGGAAGCAGCCCAAAGAATGTCCTAG 777 0.5071 MAPKRGAKPVVAAKKKPEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRVLKQRLKVPPALNQFTKTLDKSLATNLFKMLLKYRPEDKAEKKERLLKRAQSEADGKPVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTVVHKKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTRAKEKLLAKEAAQRMS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00069 258 PRINTS Ribosomal protein L7A/RS6 family signature 128 142 IPR018492 -
Cca02g00069 258 PRINTS Ribosomal protein L7A/RS6 family signature 147 160 IPR018492 -
Cca02g00069 258 PRINTS Ribosomal protein L7A/RS6 family signature 163 173 IPR018492 -
Cca02g00069 258 PRINTS Ribosomal protein L7A/RS6 family signature 173 187 IPR018492 -
Cca02g00069 258 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 256 - -
Cca02g00069 258 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 118 205 IPR004038 -
Cca02g00069 258 SUPERFAMILY L30e-like 88 229 IPR029064 -
Cca02g00069 258 Gene3D - 50 233 IPR029064 -
Cca02g00069 258 PRINTS Ribosomal protein L7A family signature 29 46 IPR001921 -
Cca02g00069 258 PRINTS Ribosomal protein L7A family signature 46 63 IPR001921 -
Cca02g00069 258 PRINTS Ribosomal protein L7A family signature 66 85 IPR001921 -
Cca02g00069 258 PRINTS Ribosomal protein L7A family signature 90 103 IPR001921 -
Cca02g00069 258 PRINTS Ribosomal protein L7A family signature 124 144 IPR001921 -
Cca02g00069 258 PRINTS Ribosomal protein L7A family signature 185 209 IPR001921 -
Cca02g00069 258 PRINTS Ribosomal protein L7A family signature 217 237 IPR001921 -
Cca02g00069 258 ProSitePatterns Ribosomal protein L7Ae signature. 166 183 IPR004037 GO:0042254|GO:1990904
Cca02g00069 258 PANTHER BNAA03G47020D PROTEIN 2 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00069 Cca-Chr2 1167203 1169456 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00069 1 258 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 84.884 2.81e-168 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00069 K02936 - jre:108984551 459.529