Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00055 ATGCCTTTCAAGAGGTTCGTTGAGATTGGAAGGGTTGCTCAGATCAACTATGGCAAAGAGTATGGGAGGCTCGTGGTCATTGTCGATGTCATTGACCAAACTAGAGCTCTTGTTGATGCTCCCGATATGGTGAGATCCCAAGTGAACCTCAAGAGGCTCTCTCTCACTGACATTAAGATTGATATTAAGAGGGTCCCCAAGAAGAAGGACCTCATTCAAGCCATGGAGGCTGCTGATGTCAAGAACAGGTGGGAGAAGAGTTCTTGGGGCAGAAAATTGATTGTGCAGAAGAGGAGGGCAGCCCTCAATGATTTTGATAGGTTCAAGATAATGTTGGCAAAGATTAAGAGGGCATCTGTTGTTAGGCAAGAACTTGCTAAGCTGAAGAAAACCGCATCTTAG 402 0.4552 MPFKRFVEIGRVAQINYGKEYGRLVVIVDVIDQTRALVDAPDMVRSQVNLKRLSLTDIKIDIKRVPKKKDLIQAMEAADVKNRWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKRASVVRQELAKLKKTAS 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00055 133 Gene3D - 1 84 IPR014722 -
Cca02g00055 133 Gene3D - 92 127 - -
Cca02g00055 133 PANTHER 60S RIBOSOMAL PROTEIN L14 1 132 IPR039660 GO:0003723|GO:0003735
Cca02g00055 133 SUPERFAMILY Translation proteins SH3-like domain 5 93 IPR008991 -
Cca02g00055 133 Pfam Ribosomal protein L14 45 117 IPR002784 GO:0003735|GO:0005840|GO:0006412
Cca02g00055 133 PANTHER RIBOSOMAL PROTEIN L14, PUTATIVE-RELATED 1 132 - -
Cca02g00055 133 CDD KOW_RPL14 7 79 IPR041985 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00055 Cca-Chr2 829112 831139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00055 1 130 Cytoplasmic Ribosomal Protein Gene Family AT2G20450 84.615 1.03e-75 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00055 K02875 - gmx:100817659 248.054
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00055 02 829112 831139 Cca02g00055 02 829112 831139 ECH