Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00052 ATGTTTACCGAATGGAAGAAGATAAGGGTTCTGGGAGAAGGTTCCTATGGAACTGTCTGTCTTGCTACGACCATTTTTCCAAAAGAAGTGCAAGAAGTGTTGATAGCTGTTAAGAGTTCAAAGCCTCACAGGGAAGAATCTTTGGAGAAAGAAGAAGCCATATTGAATTTATTCCATGGTCGCAAAGAAATTGTTCAGTGCATTGGGGGCGTACCCACCATTGAGAATAGTGGTTATGTCTACAATCTGATGATGGAGTTTGCTCCTTATGGCTCTCTTGGAAACTTGATCAAAAGGAGAAAATCACTATTGGAGAGTGAAGTAAAAGTGTACACACGCATGCTTCTGAAAGGGCTTTCTGTGATTCATGAATTTGGAGTCATTCATTGTGATCTTAAACCGGACAACGTTCTTTTATTTCCTTCCCAAGAACATGGTGTGGAGTATGAACTAAAGATTGGTGATTTTGGAATGTCTAAGAGGAAAGAAGAGGTGTTTGATGGTGACTTTTGGAAGATTAAGTTTAGAGGTTCACCATATTACATGTCACCAATCGAGGGGGCAAATCGAAGCAGCCTTGGATATATGGTCTCTTGGATGCATGGTTATTGA 612 0.4036 MFTEWKKIRVLGEGSYGTVCLATTIFPKEVQEVLIAVKSSKPHREESLEKEEAILNLFHGRKEIVQCIGGVPTIENSGYVYNLMMEFAPYGSLGNLIKRRKSLLESEVKVYTRMLLKGLSVIHEFGVIHCDLKPDNVLLFPSQEHGVEYELKIGDFGMSKRKEEVFDGDFWKIKFRGSPYYMSPIEGANRSSLGYMVSWMHGY 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00052 203 Pfam Protein kinase domain 6 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00052 203 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 4 184 - -
Cca02g00052 203 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Cca02g00052 203 Gene3D Transferase(Phosphotransferase) domain 1 1 194 - -
Cca02g00052 203 ProSitePatterns Protein kinases ATP-binding region signature. 11 38 IPR017441 GO:0005524
Cca02g00052 203 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 184 - -
Cca02g00052 203 SUPERFAMILY Protein kinase-like (PK-like) 3 184 IPR011009 -
Cca02g00052 203 SMART serkin_6 5 200 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00052 203 ProSiteProfiles Protein kinase domain profile. 5 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00052 Cca-Chr2 788915 789526 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00052 4 184 MAP Kinase Kinase Kinase AT4G36950 39.683 9.78e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca02g00052 Pkinase 1.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00052 - - ccaj:109790037 416.772