Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00050 ATGGCCAACAACTTCTATAATAACAATGTGTTAAACAGTTGTGAACAACACCCTTCATTTTGTAACAACACAAGCCCAAATGGATGCAAGTTGTGCAACCAAATTTTCACCACCACCCATGCCCTCCTAACCCACATTGAGTCTCACATGGCCCAAGAAGAGGTTGCAATAAGAAGGCTCTATTCATCACCACAACATTATCATGTCAACTCTCAAACACAATTGGGTTTCCATCGATTCCCATCACCTCCTAGTATGGGTGATGACATTATTTTCCAAGCACAATTACAACCAAAACCAATGGGGATGCCTCATTCAATGAGAAGAAACTCATTTTTCAATGATGCTGCAAGTCAGGTTGGTTCATCATCACAACAACCAATTAGGCAAATGCAACTTCCACCACAGTTTTTTCCATATGCTAGAAGTTTTAGTGATGATGGCTCTAAGTCATATATCTTGAAGTTGGAGAAACCCACCAAGAAGATTGACTTCATTGATTTGGTTAATGTGGATGATGACAACAACACAAAGGTGGAAGCACTAGATTTGGATCTAAAGCTATAG 567 0.3968 MANNFYNNNVLNSCEQHPSFCNNTSPNGCKLCNQIFTTTHALLTHIESHMAQEEVAIRRLYSSPQHYHVNSQTQLGFHRFPSPPSMGDDIIFQAQLQPKPMGMPHSMRRNSFFNDAASQVGSSSQQPIRQMQLPPQFFPYARSFSDDGSKSYILKLEKPTKKIDFIDLVNVDDDNNTKVEALDLDLKL 188
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00050 188 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Cca02g00050 188 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca02g00050 None None None
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00050 - K09228 pvu:PHAVU_007G277300g 166.777