Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00049 ATGGCAGAAACGAAAGAAGGGTCAGGTCCGGAGATGTCTCTGAAGGATCAGGGCAACGAGTTTTTCAAGTCAGGAAAGTATCTCAAAGCTGCTGCACTCTACACTCAAGCCATCAAGCAAGACCCTTCAAACCCTACTCTCTATAGTAATCGTGCAGCAGCATTGCTACAATTGGATAAGCTTAATAAAGCTCTTGATGATGCTGAGATGACAATCAAACTAAAACCTCAATGGGAAAAGGGATATTTCAGGAAGGGAAGCATATTGGAGGCCATGAAACGATACGATGATGCTTTAGCTGCCTTTCAGATAGCATTGCAGTATAACCCACAAAGTCAAGAAGTATCAAAAAAGATAAAGAAGATAAACCAACTGGTGAGAGATAGCAAGCGAGCTCAAGAAGTGGAGAACATGAGATCCAATGTTGACATGGCCAAACATTTAGATACATTGAAACCTGAAATGTCTGGAAAGTATGGATCTGAAGAATGCTGGAAAGATATGTTCTTATTCCTTGTTGAAACTATGGAGACTTCTGTAAAATCATGGCATGAAACTTCTTCAGTGGATGCTAGAGTTCACTTTCTTCTTGATATGGAAAAGACACAGACCGATAAGTATGCCCCAGTTGTGAATATTGATAAGGCCTTTGAATCACCACATACACATAGCAACTGCATTTCATTTCTTAGACAGTACGCTGAGGAGTCTTTTTCCAAAGCAGCCTGCTTGGTGACTCCCAAAAGCATCATTGCTTATCCACAGGTCTGGAAGGGACAAGGATCAAGAAAGTGGAAACATGCCCAGAGTGATGGTTTCTTTGTTCAATTTGAGTCACCTTCCCTGCGAAAGCTATGGTTTATACCCAGTTCAAATGAAAAGGGACAGACATTGTGCAGGGATCCAGAGGTTTTGGACATTGGTGCACATGAAGTTCTTCCCCGGTTATTCAAAGAAAACATGCCCCGTTCTTAG 975 0.4174 MAETKEGSGPEMSLKDQGNEFFKSGKYLKAAALYTQAIKQDPSNPTLYSNRAAALLQLDKLNKALDDAEMTIKLKPQWEKGYFRKGSILEAMKRYDDALAAFQIALQYNPQSQEVSKKIKKINQLVRDSKRAQEVENMRSNVDMAKHLDTLKPEMSGKYGSEECWKDMFLFLVETMETSVKSWHETSSVDARVHFLLDMEKTQTDKYAPVVNIDKAFESPHTHSNCISFLRQYAEESFSKAACLVTPKSIIAYPQVWKGQGSRKWKHAQSDGFFVQFESPSLRKLWFIPSSNEKGQTLCRDPEVLDIGAHEVLPRLFKENMPRS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00049 324 SUPERFAMILY TPR-like 14 122 IPR011990 GO:0005515
Cca02g00049 324 PANTHER STRESS-INDUCED-PHOSPHOPROTEIN 1 13 319 - -
Cca02g00049 324 Coils Coil 51 71 - -
Cca02g00049 324 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Cca02g00049 324 Gene3D Tetratricopeptide repeat domain 12 125 IPR011990 GO:0005515
Cca02g00049 324 PANTHER TPR REPEAT CONTAINING PROTEIN 13 319 IPR045248 GO:0006457|GO:0030544|GO:0051879
Cca02g00049 324 SMART tpr_5 45 78 IPR019734 GO:0005515
Cca02g00049 324 SMART tpr_5 79 112 IPR019734 GO:0005515
Cca02g00049 324 SMART tpr_5 11 44 IPR019734 GO:0005515
Cca02g00049 324 Pfam TPR repeat 18 58 - -
Cca02g00049 324 Pfam Tetratricopeptide repeat 80 111 IPR013105 -
Cca02g00049 324 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00049 14 122 U-box Gene Family AT3G07370 26.606 9.34e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00049 - - gmx:100790717 613.994