Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00048 ATGGGGAGGACAGGCAAATGGCTTAGGAGCTTGTTGACAGGGAAGAGAGACAGAGAAAAAGAGAAGGAAAAATGTGCCACCAACCTGTGTTTGTCAAATGGCTCAGCAGCAGAAAATCCAACCACTCCAGTTTCAGCAACCACCAAGGAAAAAAGAAGATGGAGTTTCAGGAGATCATCAGCTTCTAGGGAATTGAATCTTGCAGAATCTGGTGGTGTCACTGCTTCAGTGACAGTTCATACTGCCACAGATGCTGAGAATGATCAAAGGAATCATGATATGGTGGCTGCTGCACCTGATGCTGTAATCTGTTTGACTCCTCATTCCAATGGATCATCAACAACAAGTATCGAAGAGACTGCAGCCACTAAAATTCAGTCAGTGTTTAGGTCCTACTTGGCAAGAAAAGCATTGTGTGCTCTTAGAGGACTAGTGAAGTTGCAGGCACTAGTGAGGGGTCACTTGGTGAGAAAACAGGCCAGGGAGACACTAAGATGCATGCAGGCTTTGGTCATAGCACAAGCCAGGGCTCGTGCTCAGAGAGCGCGGATGGTGTCAGAAGGAAATGCTGATCTAAACTTATCACCCTACACAATAACCACACAGGAAACCTTCATGAATATGTATAATGAAATGGACAATGATTTGGAAGAGAATGCCAAGATTGTGGAGATGGCTGTTTGTGAATCCAAAGGCAACAACTCAAGAGGCAGAAGCAGCACTGCAAAGCGTGAGCTTTCTGAGCATAGATTTTCTGCTTATTATTCATCAAATGGTGCATACTCAAAGGAAGAAAACTACAATGCATCATCACCAGCACCATCAACACTAACAGAATTGAGTCCAAGAGCATGCAGTGGACATTTTGAGGAGTGTTCCTTCAGTACAGCACAAAGTAGTCCCTATTACTACTCAGCAGTGTCAAGAGTAGATAACAGAAAGCTTCCTTTTGCTTTCCCTAGACCATCCTACACAGAAACCATGTCCTATGACTACCCTTTATTTCCAAACTACATGGCTAACACAGAATCATCAAGGGCTAAAGCCAGATCACAGAGTGCACCAAAGGCAAGGCCAGATTCATACGAGAGGCAACCGAGCCGGCGAAGGGCTTCAGTGGAAGGAAGAAACGTCCCAAGGCCAGTGAGGATGCAAAGATCATCTTCACATGTGGGTGTCACTGCCCAAAACTACCAATATCCATGGTCAATAAAGCTTGACAGGTCCATAGTCAGTGAGAGTGGCTCTACAAGTACAGTACTCACAAACTCTAATTACTGCACATGA 1287 0.4491 MGRTGKWLRSLLTGKRDREKEKEKCATNLCLSNGSAAENPTTPVSATTKEKRRWSFRRSSASRELNLAESGGVTASVTVHTATDAENDQRNHDMVAAAPDAVICLTPHSNGSSTTSIEETAATKIQSVFRSYLARKALCALRGLVKLQALVRGHLVRKQARETLRCMQALVIAQARARAQRARMVSEGNADLNLSPYTITTQETFMNMYNEMDNDLEENAKIVEMAVCESKGNNSRGRSSTAKRELSEHRFSAYYSSNGAYSKEENYNASSPAPSTLTELSPRACSGHFEECSFSTAQSSPYYYSAVSRVDNRKLPFAFPRPSYTETMSYDYPLFPNYMANTESSRAKARSQSAPKARPDSYERQPSRRRASVEGRNVPRPVRMQRSSSHVGVTAQNYQYPWSIKLDRSIVSESGSTSTVLTNSNYCT 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00048 428 MobiDBLite consensus disorder prediction 1 20 - -
Cca02g00048 428 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 417 - -
Cca02g00048 428 MobiDBLite consensus disorder prediction 343 390 - -
Cca02g00048 428 PANTHER IQ-DOMAIN 5-RELATED 1 417 - -
Cca02g00048 428 Gene3D - 117 166 - -
Cca02g00048 428 ProSiteProfiles IQ motif profile. 118 146 IPR000048 GO:0005515
Cca02g00048 428 Pfam Protein of unknown function (DUF4005) 320 376 IPR025064 -
Cca02g00048 428 SMART iq_5 117 139 IPR000048 GO:0005515
Cca02g00048 428 SMART iq_5 140 161 IPR000048 GO:0005515
Cca02g00048 428 MobiDBLite consensus disorder prediction 32 49 - -
Cca02g00048 428 MobiDBLite consensus disorder prediction 361 376 - -
Cca02g00048 428 MobiDBLite consensus disorder prediction 32 55 - -
Cca02g00048 428 Pfam IQ calmodulin-binding motif 145 161 IPR000048 GO:0005515
Cca02g00048 428 Pfam IQ calmodulin-binding motif 121 138 IPR000048 GO:0005515
Cca02g00048 428 ProSiteProfiles IQ motif profile. 142 169 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00048 Cca-Chr2 722481 725350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00048 1 426 IQD Protein Family AT4G14750 45.778 5.47e-92 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00048 - - gmx:100810189 621.698