Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00042 ATGCCAGTAAGACAGATGAGGGAGAGCTCAGAACAACATCTTGTGATCAAACCCCATTTGCAGAACCCCATGAATGCAGCTAAGAAGGTTCCAAGAGCTGTTCAAAATGGGAAAGGTCCACCACCACTGCCCGAGGAACCCCACAACCAAACTTCACCTCATGTAAGGAACAAGGGGAGAAGGAGGAGTAGAGGTGGCCGAAAATGTGACCAAGATGTTTTGATGAGACCTATGGTGACAAGTACTGTTGAAAATGGCAGCACCATGTGTGCTGAAATAGAAATGGGTTACCCTACTTCAAGCAAGTCTTTGAGCTTTGCTCCTAGGCCTGGCTATGGGCAAGTTGGGACAAAGTGCATTGTGAAAGCTAACCACTTCTTCGCAGAGTTACCAGACAAGGACTTGAACCAGTATGATGTCAGCATCACCCCCGAAGTGTCTTCTAAAGCAGTGAACAGGTCCATTATAGCCGAACTTGTGAGGCTGTATAAGGAGTCTGACCTTGGGATGAGGCTTCCAGCATATGATGGAAGAAAAAACCTGTACACTGCAGGGCCACTTCCCTTTTCCTGGAGAGAGTTTAAGTTAAAGATTGTGGATGATGAGGATGGAGTTAATGGTCCCAAAGTGGTGATCAAGTTTGTTGCCAGGGAAAACTTGCACCACTTGGGTCAGTTTTTAGCTGGTAAACGTGCTGATGCTCCACAGGAAGCACTCCAGATTCTTGACATTGTATTGAGAGAGCTATCATCTAAGAGGTTTTGTCCAATCGGGAGATCCTTCTTTTCACCTGATATTAGAACACCTCAACGACTTGGAGAGGGTTTGGAGTCATGGTGTGGATTTTACCAAAGCATAAGGCCTACTCAGATGGGTCTTTCCCTCAATATTGATATGGCTTCTGCTGCATTCATTGAACCTCTTCCAGTTGTGGAATATGTTGGCCAGCTATTAGGAAAAGATATCCTGGCGAGGCAATTGTCTGATGCTGATCGCATTAAAATTAAGAAAGCCCTCAGAGGAGTTAAATTTGAAGTTACCCACAGAGGGAGTGTTAGAAGAAAGTATCGTGTTTCTGGTTTGACTTCTCAGCCAACCAGAGAACTCATGTTTCCTGTTGATGAGAACTCAACTATGAAGTCAGTAGTTGAATACTTCCAAGAGATGTATGGTTTCACAATTAAATATACTCACCTTCCTTGCCTTCAAGTAGGAAATCAAAAGAAAGCAAATTATTTACCTATGGAGGCCTGCAAAATTGTTGAGGGACAACGATATACAAAAAGGTTGAATGAGAAGCAGATCACTGCTCTCCTTAAAGTTACTTGTCAAAGGCCTCGTGATCGAGAAAATGACATTTTGCGGACTATTCAGCATAATGCTTATGATCAAGATCCTTATGCAAAGGAATTTGGCATTAAAATAAGTGAAAAGCTAGCTTCTGTAGAGGCGCGAATACTCCCTGCCCCATGGCTTAAATATCATGAAAGTGGGAAAGAAAAGAATTGTTTACCCCAAGTGGGTCAGTGGAATATGATGAACAAGAAAATGATTAATGGAATGACAGTCAGCTGGTGGGCATGCATAAATTTTTCACGGAGTGTGCAAGACAGTGTTGCTCGTACTTTTTGTACTGAACTTGCTCAGATGTGTCAAGTATCTGGCATGGAATTTAATCCAGAGCCTATTATCCCCATCTACAATGCCAAACCTGAGCATGTAGAGAAAGCTTTGAAGCATGTTTACCATGTGTCAACAAACAAAACCAAAGGAAAGGAATTGGAGCTTTTGTTAGCCATATTGCCTGACAACAATGGTTCTCTGTATGGTGATCTCAAGCGTATTTGTGAAACTGACCTTGGTTTAATATCACAATGTTGTCTCACAAAGCATGTCTTTAAGATCACTAAGCAATACTTGGCTAACGTGTCTTTGAAAATCAATGTCAAGATGGGAGGTAGAAACACTGTTTTGGTTGATGCTGTAAGCTGCAGAATACCATTGGTTAGTGACATACCAACTATAATATTTGGAGCAGATGTTACCCATCCTGAAAACGGAGAAGAATCCAGTCCCTCAATTGCAGCTGTAGTAGCATCCCAAGACTGGCCTGAAGTGACAAAATATGCTGGTTTAGTGTGCGCTCAAGCTCATAGGCAGGAACTCATTCAAGATTTGTACAAAATGTGGCATGACCCTGTTCGTGGCTTAGTTAGTGGTGGCATGATTCGAGATTTGCTGATTTCCTTTAGAAAGGCAACAGGACAGAAGCCTCTAAGGATTATATTTTATAGGGATGGTGTCAGTGAAGGACAATTTTACCAAGTTCTACTTTATGAGTTGGATGCAATTCGGAAGGCATGTGCTTCCTTAGAACCAAATTATCAACCTCCAGTAACTTTCATTGTCGTACAAAAAAGACATCATACTCGGTTGTTCGCAAACAACCACAGGGACAGGAACAGTACAGATAAGAGTGGAAATATATTGCCTGGGACTGTTGTTGATTCCAAAATCTGTCATCCAACAGAATTTGATTTTTATCTGTGCAGTCATGCTGGCATCCAGGGTACGAGTCGGCCAGCTCATTATCATGTTCTATGGGATGAAAACAACTTTACAGCAGATGGAATTCAGTCTTTGACTAACAATCTCTGTTATACATATGCCAGGTGTACACGCTCTGTATCCGTTGTTCCTCCAGCATATTATGCACATTTGGCTGCTTTTCGGGCGCGATTCTATATGGAACCAGACCTACAGGAAAATGGCTCCACAGGTGGTGGTGGTTCAAAGGCAAAGCCAGCAGGTGGAGAATGTGGCGTGAAGCCATTGCCAGCTCTGAAAGAAAATGTGAAGAGAGTAATGTTTTATTGTTAG 2880 0.425 MPVRQMRESSEQHLVIKPHLQNPMNAAKKVPRAVQNGKGPPPLPEEPHNQTSPHVRNKGRRRSRGGRKCDQDVLMRPMVTSTVENGSTMCAEIEMGYPTSSKSLSFAPRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVSITPEVSSKAVNRSIIAELVRLYKESDLGMRLPAYDGRKNLYTAGPLPFSWREFKLKIVDDEDGVNGPKVVIKFVARENLHHLGQFLAGKRADAPQEALQILDIVLRELSSKRFCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEYVGQLLGKDILARQLSDADRIKIKKALRGVKFEVTHRGSVRRKYRVSGLTSQPTRELMFPVDENSTMKSVVEYFQEMYGFTIKYTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTIQHNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSWWACINFSRSVQDSVARTFCTELAQMCQVSGMEFNPEPIIPIYNAKPEHVEKALKHVYHVSTNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEESSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKMWHDPVRGLVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDLQENGSTGGGGSKAKPAGGECGVKPLPALKENVKRVMFYC 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00042 959 Pfam PAZ domain 334 438 IPR003100 GO:0005515
Cca02g00042 959 SUPERFAMILY PAZ domain 302 462 IPR036085 GO:0005515
Cca02g00042 959 Gene3D - 486 659 - -
Cca02g00042 959 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 59 958 - -
Cca02g00042 959 ProSiteProfiles Piwi domain profile. 596 917 IPR003165 GO:0003676
Cca02g00042 959 ProSiteProfiles PAZ domain profile. 308 422 IPR003100 GO:0005515
Cca02g00042 959 MobiDBLite consensus disorder prediction 1 70 - -
Cca02g00042 959 CDD Piwi_ago-like 466 916 IPR045246 -
Cca02g00042 959 Pfam N-terminal domain of argonaute 118 246 IPR032474 -
Cca02g00042 959 Pfam Mid domain of argonaute 505 582 IPR032473 -
Cca02g00042 959 CDD PAZ_argonaute_like 307 421 - -
Cca02g00042 959 SMART DUF1785_2 255 307 IPR014811 -
Cca02g00042 959 Gene3D paz domain 301 426 - -
Cca02g00042 959 Gene3D - 665 959 IPR036397 GO:0003676
Cca02g00042 959 Pfam Argonaute linker 1 domain 256 305 IPR014811 -
Cca02g00042 959 SMART PAZ_2_a_3 312 444 IPR003100 GO:0005515
Cca02g00042 959 PANTHER PROTEIN ARGONAUTE 10 59 958 - -
Cca02g00042 959 SUPERFAMILY Ribonuclease H-like 588 918 IPR012337 -
Cca02g00042 959 Pfam Argonaute linker 2 domain 448 494 IPR032472 -
Cca02g00042 959 SMART Piwi_a_2 596 917 IPR003165 GO:0003676
Cca02g00042 959 Pfam Piwi domain 597 916 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00042 Cca-Chr2 579872 587832 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00042 92 959 Eukaryotic Initiation Factors Gene Family AT5G43810 87.100 0.0 1621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00042 K11593 - gmx:100819073 1841.24