Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00030 ATGGTTGGATTGGAACTCATACCCGTAGGTACAATTTTGTCTGTTCTAAGCAGCCATGTTGTGAAATCAGCTAATACAGCAATCGATGTTGTTACGGATAAAGAAAGTTTCAAGATCCTTTCAAAACACCTGCTTGATATTGCACCAGTCCTAAAGGAATTACAGCTTCAGGAATTGAATGAGTCTCAAGCTACAAGGGTTGCTCTGGAGTCTCTTGAATCAGATGTCAAAAAGGCGAATAATTTGGTTGAGAAGTACAAGAACCATGGCCGCTTTTACCCGCTGGTGAGGTGCAGATGCTTAGTCAAGGAGGTTGAACAAGTCACGAGGGATATTGGAAGGTCTGTAGCTGCACTGTCCATTGCAAACACTGAAGTCCTATCAAAAATTTCTGATCAGGTTGACAAACTACAAAATGAGATACAAAAGGTGGAGTTTGAGGCTTCACAATCTCAGTTTCAAATTGTTGGCAAGTTGAACCATGGAATGAGGGAGCAGAAATTAGATCAGGCTTTCGTAAATGACATGCTTGAGGAAATAGCAAGGGCAGTTGGGGTGCCAGTGGTGCCTTCAGAGATTAGCAAAGAGCTAGCCAGCATTAGGCAGGAAAGGGAGGAAGCAGCCAACAGAAAAGAAAGAGCTGAATTTCTTTTTTTGGAACATATAATTGAGCTACTATCACGAGCAGATGCTGCAAGGGATTATGAAGAAGTTAAGAAGCAATATTTTAAAAGGGTTCAGGTAATAGAGAGATATGATTCAAGGGAAAAATATATACCACCACTCAATTCTTTCCTTTGTCCCATAACTGGAGCTGTTATGGTAGATCCTGTCAGCCTTTGCACTGGTACTACATGTGAGAGATCTGCCATTGAAGCTTGGTTTGATGATGGCAACAGGACTGATCCAGAAACAAAAGAGGTTCTTGAAGATACTACCTTTAGATCAAATGTTCGATTAAGAGAATCCATAGAAGAGTGGAAAGAAGTTAATTACTGCTTTAGAATAAGGTCTATCAGGGAAAGCCTATTATCCAATTCTGACATATTAGTGCAAGAATCCCTGAGCGAAATGCAAGCTCTCACAAGAGAGAATTCCATTAACCAGGATTGGATTTCTATTGGAGAGCTTACTGATATTATTATCTCTATCCTTGGGAACTCTGATTCCAGAGATACGAAGATGAAGATTTTGGTTACTTTGAAGGATGCTGTAGAGGGGCATTCAAGAAACAAGGAAAAAGTGGTTGAATCTCAAGGTTGGTATCACATTATTTCCTGCTTAGGGAGCGACTCTAGAACTTCAAAGGAGGCAATTGATTTGCTATATGAGCTGCTTCAAGACCGATCTGGTTGGAATAAAATTTTCTGCAAAAAACTCTCCGAGCATCAAAGTGCAGTTTCTTACCTTGTCACTCTTCTAACGGGTCCTGTAAGTGATTCAGCTGCAGTCTCCAAAAAGATTTTGGTGGAGCTTTTTGAAATAGACGAGGAAATCATTTCAGCTGCTGCAATGTTTGGCTGGTACAAACCACTTATTGATTGCATGATTCAAGGATCGGAGTCTTCAAGAATGTCAATGGCAAAAGCCATATTGGACTTGAAAGATTTGAACTTGAAACTCCTCGGCGAGCAAGGAGTAATACTTCCTTTGCTAGAAATGTTATCTGGCAACATTGAATCTAAAGAACTGTCATTGTCAGCCCTGGTTAAACTATCAAGATTGCATACCAATAAGGGGATTATTGCAGCATCAGGAGGTGTGCCTCTTGTTCTAGATTTAATGTTCTCTTGCCGAATACAGGCATTCATTACCATTAAATGTTGTGAAATCCTTGAGAAGCTTGCTTTAGATGATGATGGAATTGATTTCTTTGTTGACGGAGAAGGGAAACAACTTGACCTAGATGACATCATCACCAATTTGCTAGCTCTACATCAGAGTCCTAACTCCTCTTGTTACCGTAAGCCTGCGTTGCGCGCTCTTCTTGGCATTTGCAAGTTTGAGAGTAGTTTAGTTAAAAAAGCAGTTGTGGCAGCCAATGGGGCATCTCTAATCCTCCCCCTTCTTGATGATTCCGACTCAGAAATCAGGGAAACCGCCATAAATCTTCTCTTTCTTTTCTCCCAACATGAACCAGGAGTAGTCGAGTACCTCTTCGGGCCAAGAAGACTAGAAGCTTTAGTTGGGTTTCTTCAGAATGATGATGTGCAAATGGCTGCTGCTGGTTTACTAGCTAACCTTCCAAAATCAGAACGGGAACTCACTGTGAAGTTGATTGACTTGGGTGGCCTTGATGCAATCATAAGCATTTTGAAAAATGGTACAATGGAAGCAAAAGAAAATGCTCTCAGTTCACTCTTCAGGTTCACAGATCCCACAAACATCGAGTCACAGCGCGATTTGGTTAAACGAGGAATATATCCTTTGCTTGTAAATTTTCTCAACACTGGTTCAGTAACAGCAAAGGCAAGAGCAGCAGCATTCATTGGTGATCTTTCTATGAGCACTCCAAAGCTCACTGCTGTTTCCAAATCCAATGGTTGGTGGTGCAAGTGTTTTAGATCATCACAAGTTCCTTTGTGTTCAGCACATGGGAGTGTATGCAGTGTGAGTTCCACATTTTGTCTATTGGAAGCCAATGCTTTGCCTGGTTTGATAAAGCTGTTACATGGGGAGGTTCATGCAACTGCTTATGAAGCCATACAGACTCTTTCCACATTGATTTTGGAAGACTTTCCCCAAAGGGGAGCTCTTGTCTTGCATGAGTCAAATGCGATGAGACCCCTATTGGAAATTCTGAATTGGGGAAGTGATTCTCTCAAGGCACAAGCTCTAGGACTCTTGGAGAAGGTGTTTGTCTCAAAGGAAATGGTTGAATACTATGGTACAACAGCAAGGTTACTGACTGACATGAATGTGTATGGGGATGGCCACCTCAGGAGAAAGGCTGCCAGGGTACTTTCATTGCTTGAACGCTATTCAAAGTCATCATCATCTGCAATCTCTGGAGTTCTGGACTGA 3024 0.4157 MVGLELIPVGTILSVLSSHVVKSANTAIDVVTDKESFKILSKHLLDIAPVLKELQLQELNESQATRVALESLESDVKKANNLVEKYKNHGRFYPLVRCRCLVKEVEQVTRDIGRSVAALSIANTEVLSKISDQVDKLQNEIQKVEFEASQSQFQIVGKLNHGMREQKLDQAFVNDMLEEIARAVGVPVVPSEISKELASIRQEREEAANRKERAEFLFLEHIIELLSRADAARDYEEVKKQYFKRVQVIERYDSREKYIPPLNSFLCPITGAVMVDPVSLCTGTTCERSAIEAWFDDGNRTDPETKEVLEDTTFRSNVRLRESIEEWKEVNYCFRIRSIRESLLSNSDILVQESLSEMQALTRENSINQDWISIGELTDIIISILGNSDSRDTKMKILVTLKDAVEGHSRNKEKVVESQGWYHIISCLGSDSRTSKEAIDLLYELLQDRSGWNKIFCKKLSEHQSAVSYLVTLLTGPVSDSAAVSKKILVELFEIDEEIISAAAMFGWYKPLIDCMIQGSESSRMSMAKAILDLKDLNLKLLGEQGVILPLLEMLSGNIESKELSLSALVKLSRLHTNKGIIAASGGVPLVLDLMFSCRIQAFITIKCCEILEKLALDDDGIDFFVDGEGKQLDLDDIITNLLALHQSPNSSCYRKPALRALLGICKFESSLVKKAVVAANGASLILPLLDDSDSEIRETAINLLFLFSQHEPGVVEYLFGPRRLEALVGFLQNDDVQMAAAGLLANLPKSERELTVKLIDLGGLDAIISILKNGTMEAKENALSSLFRFTDPTNIESQRDLVKRGIYPLLVNFLNTGSVTAKARAAAFIGDLSMSTPKLTAVSKSNGWWCKCFRSSQVPLCSAHGSVCSVSSTFCLLEANALPGLIKLLHGEVHATAYEAIQTLSTLILEDFPQRGALVLHESNAMRPLLEILNWGSDSLKAQALGLLEKVFVSKEMVEYYGTTARLLTDMNVYGDGHLRRKAARVLSLLERYSKSSSSAISGVLD 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00030 1007 Coils Coil 69 89 - -
Cca02g00030 1007 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Cca02g00030 1007 Gene3D - 490 848 IPR011989 -
Cca02g00030 1007 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1004 - -
Cca02g00030 1007 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Cca02g00030 1007 SUPERFAMILY ARM repeat 635 993 IPR016024 -
Cca02g00030 1007 Gene3D - 861 1004 IPR011989 -
Cca02g00030 1007 SUPERFAMILY ARM repeat 463 719 IPR016024 -
Cca02g00030 1007 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1004 - -
Cca02g00030 1007 Coils Coil 127 154 - -
Cca02g00030 1007 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Cca02g00030 1007 Gene3D - 9 123 IPR036537 GO:0007166
Cca02g00030 1007 SUPERFAMILY RING/U-box 247 332 - -
Cca02g00030 1007 Coils Coil 197 217 - -
Cca02g00030 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 335 IPR013083 -
Cca02g00030 1007 SMART arm_5 752 792 IPR000225 GO:0005515
Cca02g00030 1007 SMART arm_5 870 910 IPR000225 GO:0005515
Cca02g00030 1007 SMART arm_5 795 835 IPR000225 GO:0005515
Cca02g00030 1007 SMART arm_5 670 710 IPR000225 GO:0005515
Cca02g00030 1007 SMART arm_5 711 750 IPR000225 GO:0005515
Cca02g00030 1007 SMART arm_5 408 447 IPR000225 GO:0005515
Cca02g00030 1007 SMART arm_5 914 954 IPR000225 GO:0005515
Cca02g00030 1007 SMART arm_5 535 574 IPR000225 GO:0005515
Cca02g00030 1007 CDD RING-Ubox_PUB 265 307 IPR045210 -
Cca02g00030 1007 Gene3D - 336 489 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00030 Cca-Chr2 379874 383881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00030 264 999 U-box Gene Family AT1G20780 27.123 4.48e-41 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00030 - - gsj:114377374 1652.49