Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00027 ATGGAGCAACCGCCGTCGCCGCCGCCACGCACCATCCTCGGAAAGTACCAGCTCACGCGCTTCCTCGGCCGCGGGAACTTCGCCAAGGTGTACCAGGCGCACTCGCTGCTCGACGGCGCCACGGTCGCGGTAAAAGCCATCGACAAGTCCAAGACGGTCGACGCCGCCATGGAGCCCCGCATCGTGCGCGAGATTGACGCCATGCGCCGCCTCCAGCACCACCCTAACATCCTCAAAATCCACGAAGTCCTTGCCACCAAGACCAAGATCTACCTCATCGTGGACTTCGCCGGCGGCGGCGACCTCTGCTCCAAGCCCCCCCGCCGCGGCCGCCTCCCGGAGTCCCTCGCGCGCCGCTACTTCGCGCAGCTCGTCTCGGCGCTCCGCTTCTGCCACCGCCACGGCGTCGCTCACCGCGACCTCAAGCCGCAGAACCTCCTCCTGGACGCCGGCGGCGACCTCAAGGTGTCGGACTTCGGGCTCTCGGCGCTCCCGGAGCACCTCCAGGACGGGCTCCTCCACACCGCCTGCGGCACGCCGGCCTACACGGCGCCGGAGATCCTCCGGCGCGTGGGGTACGACGGGTCGAAGGCGGACGCGTGGTCCTGCGGCGTTATCCTCTACGTCCTCCTGGCGGGCCACCTCCCCTTCGACGACTCGAACATTCCCGCCATGTGCCGGCGCATTTCCCGGCGCGACTTCCAGTTCCCTCCCTGGATCTCGAGAGCCGCGCGGAGCCTCATCTACCAATTGCTGGACCCAAACCCTAAAACCCGAATTAAACTAGAAAACGTGTTCGACAACGCGTGGTTTAAGAACAAGAATTCGGCACGTGTGAACGCGGAAGAGAGTGTTTTCGAGAGTGACTTGTATAACAAGTGCTGCGACGGTTATAAGTTGGGGATGAACGCTTTTGACATAATCTCCATGTCCTCGGGGTTGGACTTGCGGGGGCTGTTTGAAACGACGTCGGATAAGGGGAGGCGGTGGGAGAAACGCTTCACTTCCGATAAGAGCGTGGAGGCCGTGGAGGCGAAGGTGAAGGAggttgggttgaatttggggtttagggttgaggttgggaagaacggtgcgattgggttggggaaggggAAGGTCGCTTTGGTGGTTGAGGTGTTTGAGATTGTGCCTCAGCTGTTGCTTGTGGCTGTTAAAGTGGTCGATGGTGGGGTAGAGTTTGAGGACCTTCATTGGGATGATTGGAGAATTGGCCTCCAAGATGTTGTTCTCTCTTGGCATCATAATCATGACAATTTGTACCGCTCTCTCTATAACCCACAAGGCTCTCTCCATTCCACTCGTTGCTTTGCTCGTTGCCGTGTTGTTGCCGTCTCTTTCTAA 1362 0.5749 MEQPPSPPPRTILGKYQLTRFLGRGNFAKVYQAHSLLDGATVAVKAIDKSKTVDAAMEPRIVREIDAMRRLQHHPNILKIHEVLATKTKIYLIVDFAGGGDLCSKPPRRGRLPESLARRYFAQLVSALRFCHRHGVAHRDLKPQNLLLDAGGDLKVSDFGLSALPEHLQDGLLHTACGTPAYTAPEILRRVGYDGSKADAWSCGVILYVLLAGHLPFDDSNIPAMCRRISRRDFQFPPWISRAARSLIYQLLDPNPKTRIKLENVFDNAWFKNKNSARVNAEESVFESDLYNKCCDGYKLGMNAFDIISMSSGLDLRGLFETTSDKGRRWEKRFTSDKSVEAVEAKVKEVGLNLGFRVEVGKNGAIGLGKGKVALVVEVFEIVPQLLLVAVKVVDGGVEFEDLHWDDWRIGLQDVVLSWHHNHDNLYRSLYNPQGSLHSTRCFARCRVVAVSF 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00027 453 SUPERFAMILY Protein kinase-like (PK-like) 12 282 IPR011009 -
Cca02g00027 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Cca02g00027 453 PANTHER SERINE/THREONINE KINASE 9 422 - -
Cca02g00027 453 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Cca02g00027 453 CDD CIPK_C 303 413 - -
Cca02g00027 453 Gene3D Transferase(Phosphotransferase) domain 1 9 304 - -
Cca02g00027 453 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 9 422 - -
Cca02g00027 453 ProSiteProfiles NAF domain profile. 297 321 IPR018451 GO:0007165
Cca02g00027 453 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00027 453 Pfam NAF domain 302 359 IPR004041 GO:0007165
Cca02g00027 453 Gene3D Kinase associated domain 1, KA1 305 417 - -
Cca02g00027 453 SMART serkin_6 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00027 453 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00027 Cca-Chr2 347520 349496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00027 4 422 Miscellaneous Gene Families AT3G23000 57.882 2.42e-165 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Cca02g00027 Pkinase 5.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00027 K12761 - gmx:100305372 713.375