Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00020 ATGAGAGTGTACGGGTTCCTCTCAGTCCTGATGACCCTCTTGTTGGGTTCCTCGAACGGGCAAACCCCGCGACAGCAGAACAACACGGGGTTCAGGTGCACGGGGACACGCAGGTGCGAGGCGTACGCATACTACACCGCTTCAAGCCCGGACTTCCTAGACCTAGCCTCGATCGGCGACCTCTTCGAGGTGAGCCGGCTGATGATATCCTCCCCGAGCAACATCTCAAACCCCTCGACAGCCTTAGTCCCGAAGCAGCCCCTCCTCGTGCCTCTCACGTGCTCCTGCAACCGCGTCAACGCCACCTTCGGCTCCCTCTCCTACGCCAACATCTCCTACAACATCAAACCCAACGACACCTTCTTCGTCGTCTCCACCTTCAAGTTCAACAACCTCACCACCTACCCCTCCGTCGAGGTCGTCAACCCCACCCTCGTCGCCACCAACCTCTCCATCGGCCAGACCACCATCTTCCCCGTTTTCTGCAAATGCCCTAACACCACCAATTTCAATTACTTTATCTCCTACGTCGTACAACCCTCCGACAATGTTTCCTCCATCGCTTCAACCTTCGGGTCGGATCAACAATCCATAATTGACGTCAACGGTGACACTCTCCATGATTATGATACTATTTTTGTTCCGGTGACGCGGCTCCCGGCTCTTTCGCAGGCCGCGGGGGCTTCTCCTACGGCGCCGGGACCCACGGCGGAGAACAGGACTGTTTCGAGTGGAGACGATCGGACGGGGACTGTTAGAGGGCTGGGGATTGGGTTGGGAGTGGTGGGGTTGTTGCTGATTTTGGTGAGCGTTTTGTGGGTGTACAGGGAGGTTGTGATGAAGGAGAAGTTGGGGCCGGGGGTGGTGAGGGATGATGAGGAGGAACAGAGGAAGGTGTATTTTGGAGGGAAGGaggagaaggtggatgtgaagctgatggcgaatgtgTCAGATTGTTTGGACAAGTATAGGGTTTTTGGGGTGGAGGAACTGGTGGAGGCTACCGATGGGTTTGATCAGAGTTGCTTGGTTCAGGGGTCTGTTTACAGAGGGGAAATTGATGGGGAGGTCTTTGCGATCAAGAAGATGAAATGGAATGCATACGAGGAACTCAAGATCTTGCAGAAGGTAAACCATGGGAATCTGGTGAAGTTGGAGGGATTTTGCATAGACCCAGAAGAAGCAAATTGCTATCTAGTTTATGAATATGTGGAGAATGGATCTCTGTACTCATGGCTACATGAGGACAAAAACGAAAAGCTGAACTGGAAAAAAAGGCTAAGAGTAGCCATTGACATTGCCAATGGCCTCCAATACATCCACGAGCACACAAGGCCACGAGTTGTGCACAAAGACATCAAGAGTAGCAACATTCTCTTGGACTCGAACATGAGAGCCAAAATTGCCAATTTTGGGCTTGCAAAGTCAGGAATGAATGCCATTACCATGCACATTGTGGGAACACAGGGCTACATTGCCCCTGAATATCTGGCTGATGGTGTGGTCTCTACAAAGATGGATGTGTTCTCTTTTGGGGTTGTGTTGCTTGAACTAATTTCTGGGAAGGAGGCCATTGATGAGGAGGGAAATCTCTTGTGGGCAAGTGCCATCAAAACCTTTGAAGTGGATAATGAGCCAGAGAAGTCTAGCAGACTGAAGGAATGGTTGGATAAGAATTTTTTAAGGGAGACATTTTCCACGGAAAGTTTGATGGGTGTTCTCAATGTAGCAATTGCTTGTTTGCATAGAGACCCCTCAAAGAGGCCTAGCATAATGGATATTGTCTATGCACTAAGTAAAAGTGAAGATATGGGCTTTGACATCTCAGATGAAGGGATTGGATCCCCACGGGTTGTGGCTAGGTGA 1866 0.4968 MRVYGFLSVLMTLLLGSSNGQTPRQQNNTGFRCTGTRRCEAYAYYTASSPDFLDLASIGDLFEVSRLMISSPSNISNPSTALVPKQPLLVPLTCSCNRVNATFGSLSYANISYNIKPNDTFFVVSTFKFNNLTTYPSVEVVNPTLVATNLSIGQTTIFPVFCKCPNTTNFNYFISYVVQPSDNVSSIASTFGSDQQSIIDVNGDTLHDYDTIFVPVTRLPALSQAAGASPTAPGPTAENRTVSSGDDRTGTVRGLGIGLGVVGLLLILVSVLWVYREVVMKEKLGPGVVRDDEEEQRKVYFGGKEEKVDVKLMANVSDCLDKYRVFGVEELVEATDGFDQSCLVQGSVYRGEIDGEVFAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIDPEEANCYLVYEYVENGSLYSWLHEDKNEKLNWKKRLRVAIDIANGLQYIHEHTRPRVVHKDIKSSNILLDSNMRAKIANFGLAKSGMNAITMHIVGTQGYIAPEYLADGVVSTKMDVFSFGVVLLELISGKEAIDEEGNLLWASAIKTFEVDNEPEKSSRLKEWLDKNFLRETFSTESLMGVLNVAIACLHRDPSKRPSIMDIVYALSKSEDMGFDISDEGIGSPRVVAR 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00020 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Cca02g00020 621 Pfam Protein kinase domain 359 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00020 621 Pfam LysM domain 176 214 IPR018392 -
Cca02g00020 621 Gene3D LysM domain 173 215 IPR036779 -
Cca02g00020 621 Gene3D Phosphorylase Kinase; domain 1 308 403 - -
Cca02g00020 621 MobiDBLite consensus disorder prediction 225 247 - -
Cca02g00020 621 SUPERFAMILY Protein kinase-like (PK-like) 344 598 IPR011009 -
Cca02g00020 621 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 27 619 - -
Cca02g00020 621 PANTHER - 27 619 - -
Cca02g00020 621 SMART serkin_6 338 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g00020 621 Gene3D Transferase(Phosphotransferase) domain 1 404 610 - -
Cca02g00020 621 ProSiteProfiles Protein kinase domain profile. 278 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00020 Cca-Chr2 268448 271849 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00020 30 600 Receptor kinase-like Gene Family AT2G23770 32.995 9.14e-81 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Cca02g00020 Pkinase 3.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00020 - - gmx:100802872 927.161