Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00019 ATGGAAAGCAGAGTGACATATGAGAGTCATTTGAACCTTAAGGCAACAGAACTTAGATTGGGCTTGCCAGGCACCGAGGAAAAGGAGGACGCCAAAACTCTTCATTCTGTTAGAAACAACAAAAGGCAACTTCGTGAAACTTCAGAAGACTCTGTTTCCATTTCCAAACCCTCAGATGTGGAGACTCATCATGCAGCCCCTCCTGCCAAGGCAAAGATAGTGGGTTGGCCACCAATCAGATCTTACAGGAAGAACAGCCTGCAGGAGGGTGAGGGGGATGGGATCTATGTGAAAGTGAGCATGGATGGAGCACCTTACCTCAGAAAGATTGACTTGAAACTCTATAGGGGCTATCCTCAACTACTCAAAGCTTTAGAGACCATGTTCAAGTTGACCATAGGGGAATACTCTGAAAGAGAGGGTTATAAGGGATCTGAATATGCACCTACATATGAAGACAAGGATGGTGATTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTATGACTTCCTGCAAAAGGCTAAGGATCATGAAAGGGTCAGAAGCTAGAGGACTGGGTTGTGGTGTATGA 576 0.4549 MESRVTYESHLNLKATELRLGLPGTEEKEDAKTLHSVRNNKRQLRETSEDSVSISKPSDVETHHAAPPAKAKIVGWPPIRSYRKNSLQEGEGDGIYVKVSMDGAPYLRKIDLKLYRGYPQLLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFMTSCKRLRIMKGSEARGLGCGV 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00019 191 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 188 IPR003311 GO:0005634|GO:0006355
Cca02g00019 191 MobiDBLite consensus disorder prediction 21 67 - -
Cca02g00019 191 Gene3D - 89 191 - -
Cca02g00019 191 SUPERFAMILY CAD & PB1 domains 84 180 - -
Cca02g00019 191 Pfam AUX/IAA family 42 188 IPR033389 -
Cca02g00019 191 PANTHER AUXIN-INDUCED PROTEIN 11 188 - -
Cca02g00019 191 ProSiteProfiles PB1 domain profile. 94 181 IPR000270 GO:0005515
Cca02g00019 191 MobiDBLite consensus disorder prediction 21 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00019 Cca-Chr2 258884 260616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00019 97 187 B3 DNA Binding Superfamily AT2G46530 38.462 1.31e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Cca02g00019 AUX_IAA 4.7e-52 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00019 K14484 - gmx:100800212 318.161