Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00010 ATGGATCGTTTTTTTCCTGAGAAACTTCTCGGTGAGATTTTCTGGGATGGACCTCTTTTGTCCACTGGTCAAAGTGATTCAGTTCAGTATTCCCAAGACATCAAGGGTGAAGAAGCTTTTCCTCTTGCAACTGGAAGCGCTTTCGTCCAATATAGAGACCTACCCAGAATTAAATACCCCCTAAACGGTTCAAACTCACAGAACATGAGTAAGAGAATGCTTGCGTTCTTGAGAAAAAGTTGGCCTGTGGAGAGGAACAGGGTGGATGAGATTGAGAATGAAAGAGAACGTGGTTTCAGGCACATGATTAATGAAAGAATGAGGAGGCAGAGGCAGAGGCAGTGTTGCTTGGCCCTGCATTCAATGTTACCACATGGAACCAAAACGGATAATAATTCTGTAATTCAAATGGCAGCCAAGGAGATTGTACGGCTACAAGGATGCAGAGAAGAGTTACAAAGGAAAAATTTTGAGCTTGAAGCTGTTGATAGCAACCAAGGTCGGGGAAGAAGAATTCAATATTTAAGAGTTGCACATCCTAAGTGTGGAATTGATTCTTTGATTGAGAGCCTCAAATGCTTGAAAGACCAAGGAGTGGACACCAGAGGCATCAAATCAACTTTCTCCCCACAAGAGTTGTTTGCACAGTTAGAGATAGAAACTGATGAGGTATATATGCATCATTGTGCTTAG 693 0.4228 MDRFFPEKLLGEIFWDGPLLSTGQSDSVQYSQDIKGEEAFPLATGSAFVQYRDLPRIKYPLNGSNSQNMSKRMLAFLRKSWPVERNRVDEIENERERGFRHMINERMRRQRQRQCCLALHSMLPHGTKTDNNSVIQMAAKEIVRLQGCREELQRKNFELEAVDSNQGRGRRIQYLRVAHPKCGIDSLIESLKCLKDQGVDTRGIKSTFSPQELFAQLEIETDEVYMHHCA 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00010 230 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 96 145 IPR011598 GO:0046983
Cca02g00010 230 PANTHER TRANSCRIPTION FACTOR BHLH92 1 222 - -
Cca02g00010 230 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 222 IPR044658 -
Cca02g00010 230 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 160 IPR036638 GO:0046983
Cca02g00010 230 Pfam Helix-loop-helix DNA-binding domain 100 146 IPR011598 GO:0046983
Cca02g00010 230 Gene3D - 91 157 IPR036638 GO:0046983
Cca02g00010 230 Coils Coil 135 155 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00010 33 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G43650 37.629 8.90e-37 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00010 - - gmx:100815874 331.643