Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00005 ATGGAAACAGCGCTCACTTGCTTCTTCTGTGGTAAAGTCCCGGCGAGAGCAAAATTAGGGGCTGCAACTGCAAGTGAGCGCTTCCGTTGTAATAATGCCTCTGGATACGTTCGTTTTTCTTCCTTCTGCCGTAACAATGCCTATGCCATGTCCACGTGTTCTCTGTCCCCTTCATTCGGAACCCATCGACTCATTCGAAGCGCCGCCAACAGCAGTAGCAGTGAAACTAAGGCTCCCAGTGATGCCAAaagtagaagaaggagaagaaggagaagCGGCTTTGAAAAAAGTTGGTCTTCTTCTCAGACTCAGGCGGTGGAGGAGGAGGGTAGTGGTATCCATCAGAATGGAGACCCTATTGGGAAGAAGGATCTTGGGAAGAGCGTGATGAGGTGGATTCGCGATAGCATGAGGGCTATGGCATCTGATTTGGCAGCAGCGGAGTTACAGGGAGAGTTGGAGCTGTGGGAGCGCATGCGACCGGGTCTCACTTTTATCATGCAGGCCCAGCCATACCTGAATGCAGTTCCGATGCCCCTTGGCCTTGAAGTTATCTGCTTGAAGGCCTGCACCCACTATCCCACTCTATTCGACCATTTTCAGAGGGAGCTTCGTGATGTTCTCCAAGACCTGCAGAGTAAGTCCTTGGTTCACGACTGGCGAGACACCGAGTCCTGGAAACTGCTTAAGGCCCTCGCCAATTCAGCTCAGCATAGGGCAGTTGTGAGAAAGATAACGCAGCCGAAAACTGTTCAAGGCGTTTTAGGAATGGATTTAGAAAAGGTCAAAGCCTTACAGCACAGGATTGACGAATTCACCAACCACATGTCGGAACTGCTCCGAATTGAAAGGGATGCTGAATTGGAGTTTACTCAGGAGGAATTGGATGCTGTTCCTAAACCAGATGATACTTCTGATTCTTCAAAACCGATTGATTTCTTGGTTAGCCATGGCCAGCCTCAACAAGAACTCTGCGACACTATTTGTAATTTAAACGCCATCAGTACCTCTACAGGACTTGGGGGAATGCATTTGGTGTTATTCAAGGTTGAAGGAAACCATCGGTTACCACCTACCACTCTTTCACCCGGAGACATGGTTTGTGTAAGAACGTGTGACAGCAGGGGTGCAATTACAACTTCTTGCATACAAGGATTTGTAAACAGTTTCGGGGATGATGGCTATAGTATTACAGTTGCTCTAGAGTCACGCCATGGTGATCCTACATTTTCTAAACTATTTGGGAAGAGTGTACGCATTGATCGTATTCAAGGACTGGCTGATACGGTTACCTATGAGCGGAACTGTGAAGCTTTAATGCTGCTTCAGAAGAATGGTTTGCGAAAGAAGAATCCTTCAATTTCTGTTGTTGCTACACTGTTTGGAGATGGGGAAGATGTTACATGGCTTGAGAAGAATCATTTGGCTGACTGGGCAGACGAGAAATTGGATGGAGCATTAGGAAGTGAAACCTTTGACAATTCTCAGCAAAGAGCAATTGCACTGGGTTTGAATAGAAAGAGGCCTGTATTGGTTATCCAAGGGCCTCCTGGTACAGGTAAGACTGGTTTGCTCAAGCAACTTATAGCATGTGCTGTTCAGCAAGGTGAAAGGGTTCTTGTTACAGCACCTACTAATGCAGCTGTTGATAACATGGTTGAAAAGCTTGCAAATGTCAGATTAAATATTGTGCGGGTAGGAAATCCAGCTCGTATATCAAAAATTGTGGGATCAAAGTCTCTAGGAGAAATTGTAAATGCTAAGCTTTCAAGTTTTCGAGAAGAGTATGAGAGGAAGAAGTCAGATCTCAGAAAAGATTTAAGACTTTGTTTAAGGGATGATTCACTAGCTGCGGGCATACGCCAACTTCTGAAGCAGCTGGGAAGGTCACTGAAGAAAAAAGAAAAGCAGACCATAAATGAAGTTCTATCTAGTGCTCAAGTTGTGCTTGCCACTAATACTGGAGCAGCTGATCCTTTGATTCGAAGGCTAGATACTTTTGACTTGGTTGTCATAGATGAAGCTGGACAGGCAATTGAACCCTCTTGCTGGATTCCCATACTGCAGGGAAAGCGCTGTATTCTTGCTGGTGATCAATGCCAACTTGCTCCTGTTATATTATCACGAAAGGCCTTAGAAGGTGGTCTAGGAGTATCTCTACTGGAGAGAGCTGCAACTTTGCATGAAGGGATTCTCACCACCAGGTTAACAACTCAATACCGTATGAATGATGCAATTGCTAGTTGGGCTTCAAAGGAGATGTACGGAGGATTGTTGAAGTCCTCAGAGACTGTCTTTTCACATCTTCTTGTAGACTCTCCTTTTGTCAAGCCTACTTGGATAACACAATGCCCACTGCTATTGCTAGATACTAGAATGCCCTATGGAAGTCTGTCAGTTGGTTGCGAAGAGCATCTAGACCCAGCAGGAACAGGCTCGTTGTATAATGAAGGAGAAGCTGAGATAGTTTTGCAGCATGTCTTTTCCTTAATTTATGCTGGTGTTAGCCCAACTGCTATTGCAGTGCAATCCCCTTATGTTGCTCAGGTTCAACTTTTGAGGGACAAGATTGATGAATTTCCCGAAGCTGCAGGTACTGAGGTTGCGACCATCGACAGTTTTCAAGGTCGGGAAGCTGATGCAGTTATTTTATCCATGGTACGATCAAACAATCTGGGAGCCGTTGGATTCCTAGGGGATAGCAGAAGAATCAATGTTGCCATCACAAGAGCACGCAAACATTTAGCTTTGGTCTGTGACAGCTCCACCATATGCCACAATACCTTCCTAGCAAGACTTCTGCGTCATATTAGACACTTTGGTAGGGTGAAGCATGCAGAACCAGGTAGTTTTGGAGGATACGGACTTGGGATGAATCCAATATTACCTTCCATTAATTAG 2901 0.4509 METALTCFFCGKVPARAKLGAATASERFRCNNASGYVRFSSFCRNNAYAMSTCSLSPSFGTHRLIRSAANSSSSETKAPSDAKSRRRRRRRSGFEKSWSSSQTQAVEEEGSGIHQNGDPIGKKDLGKSVMRWIRDSMRAMASDLAAAELQGELELWERMRPGLTFIMQAQPYLNAVPMPLGLEVICLKACTHYPTLFDHFQRELRDVLQDLQSKSLVHDWRDTESWKLLKALANSAQHRAVVRKITQPKTVQGVLGMDLEKVKALQHRIDEFTNHMSELLRIERDAELEFTQEELDAVPKPDDTSDSSKPIDFLVSHGQPQQELCDTICNLNAISTSTGLGGMHLVLFKVEGNHRLPPTTLSPGDMVCVRTCDSRGAITTSCIQGFVNSFGDDGYSITVALESRHGDPTFSKLFGKSVRIDRIQGLADTVTYERNCEALMLLQKNGLRKKNPSISVVATLFGDGEDVTWLEKNHLADWADEKLDGALGSETFDNSQQRAIALGLNRKRPVLVIQGPPGTGKTGLLKQLIACAVQQGERVLVTAPTNAAVDNMVEKLANVRLNIVRVGNPARISKIVGSKSLGEIVNAKLSSFREEYERKKSDLRKDLRLCLRDDSLAAGIRQLLKQLGRSLKKKEKQTINEVLSSAQVVLATNTGAADPLIRRLDTFDLVVIDEAGQAIEPSCWIPILQGKRCILAGDQCQLAPVILSRKALEGGLGVSLLERAATLHEGILTTRLTTQYRMNDAIASWASKEMYGGLLKSSETVFSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSVGCEEHLDPAGTGSLYNEGEAEIVLQHVFSLIYAGVSPTAIAVQSPYVAQVQLLRDKIDEFPEAAGTEVATIDSFQGREADAVILSMVRSNNLGAVGFLGDSRRINVAITRARKHLALVCDSSTICHNTFLARLLRHIRHFGRVKHAEPGSFGGYGLGMNPILPSIN 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00005 966 Gene3D - 295 426 - -
Cca02g00005 966 Gene3D - 740 948 IPR027417 -
Cca02g00005 966 MobiDBLite consensus disorder prediction 67 122 - -
Cca02g00005 966 CDD DEXXQc_SMUBP2 492 741 - -
Cca02g00005 966 MobiDBLite consensus disorder prediction 96 110 - -
Cca02g00005 966 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 70 966 - -
Cca02g00005 966 Coils Coil 593 613 - -
Cca02g00005 966 CDD SF1_C_Upf1 742 938 IPR041679 -
Cca02g00005 966 SMART ultradead3 488 730 IPR014001 -
Cca02g00005 966 Pfam AAA domain 492 708 IPR041677 GO:0004386
Cca02g00005 966 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 491 928 IPR027417 -
Cca02g00005 966 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 70 966 - -
Cca02g00005 966 Gene3D - 276 724 IPR027417 -
Cca02g00005 966 Pfam AAA domain 717 921 IPR041679 -
Cca02g00005 966 SMART AAA_5 507 722 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00005 Cca-Chr2 56908 70393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g00005 490 681 Core DNA Replication Machinery Family AT1G08840 25.773 3.99e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00005 - - gmx:100799347 1634.39