Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02466 ATGCTTCGGTTTGTTTCAACTGGGTCAAATATTTTTTCACGAGCCGCAGTCGTAAAAGCTCTGCGAGTGTTCAGTTCCGCCACCTGTTCGACCATTGGCCTGACCCAAACCAAGGTTGAAGTTGAAGTTGAAGAATCTACAAACAAATGGAACAATGCCACTGAACTTTTAAGCAAATGGGGTTGTAGTGATGATGATTTGATGAGAATATTCACGCGTTGTCCCTCATTGCGCAATGCTGATCCCACGCAGGTTCAATCAAAACTGTATCTGCTGAATGATTTGGGCATACACGGGTCTGAACTTGTGAAGATTCTCAATTGTAGGCCACGGTTTTTTAGTACTCGGGTTAACCGTTGCTTAGATGAGAGGATTGCGTATCTTACTTCATTGTTTGAGACGAAGGAAGTGCTTCAGAAGGCCATTGTGAGGAACCCTTCGTTGCTGCTATCGAAGGGTTGCTATAATGTTAAGGCAACAGTTGAGATCTATGAGAAGTTGGGTGTCAAGAAAGAGGACTTGGTTCAAATGCTCCTTTTGCGGCCCACGGTTATTTCGAGGACTTCATTCAATGCTGAGAAGCTGGAATATCTAGGCAAGACGGGGCTTACCAAGGATTCAAAGATGTATAAGTATGCGGCCACATTGATAGGAATCTCTCGTGTGGAAACGATTCGGGATAAGTTGGCGAATTTCGCGAGGTTTGGGTTTTCTGAGGATGAGATATTTGGTCTTATGGGGAGGTCTCCTAATGTTTTGACATTGTCGACCGATAAGGTTCAGAGGAACATGACTTTCATTTTGGGCACCATGAACCTGGATGCTAAGATGGTTCTAAAGCAGCCATATCTCTTGTATGCCAATGTGGATACTGTTCTGAAGCCAAGAGTGCTTCTAGCATTGAAGATACAAGATATGGATTCAAAGTTGCAAATCATGGGACCAACGATGGTAAGGTCGCTGAGGATGACAGAGGAGAGGTTTTTAACCATGTTTGTCAAATGCCATGACAAGGATGTTGCCAGTGAATTGATGGAATTCTATAAGAGGACTAAGGAGGTGAAGAGATTAGGCGAGTCATCAAAGAAGTATA 1093 0.4355 MLRFVSTGSNIFSRAAVVKALRVFSSATCSTIGLTQTKVEVEVEESTNKWNNATELLSKWGCSDDDLMRIFTRCPSLRNADPTQVQSKLYLLNDLGIHGSELVKILNCRPRFFSTRVNRCLDERIAYLTSLFETKEVLQKAIVRNPSLLLSKGCYNVKATVEIYEKLGVKKEDLVQMLLLRPTVISRTSFNAEKLEYLGKTGLTKDSKMYKYAATLIGISRVETIRDKLANFARFGFSEDEIFGLMGRSPNVLTLSTDKVQRNMTFILGTMNLDAKMVLKQPYLLYANVDTVLKPRVLLALKIQDMDSKLQIMGPTMVRSLRMTEERFLTMFVKCHDKDVASELMEFYKRTKEVKRLGESSKKY 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02466 364 Pfam mTERF 117 329 IPR003690 GO:0003690|GO:0006355
Cca01g02466 364 Pfam mTERF 55 149 IPR003690 GO:0003690|GO:0006355
Cca01g02466 364 PANTHER CGI-12 PROTEIN-RELATED 14 363 IPR003690 GO:0003690|GO:0006355
Cca01g02466 364 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 14 363 - -
Cca01g02466 364 SMART mt_12 243 274 IPR003690 GO:0003690|GO:0006355
Cca01g02466 364 SMART mt_12 275 307 IPR003690 GO:0003690|GO:0006355
Cca01g02466 364 SMART mt_12 103 134 IPR003690 GO:0003690|GO:0006355
Cca01g02466 364 SMART mt_12 139 170 IPR003690 GO:0003690|GO:0006355
Cca01g02466 364 SMART mt_12 207 238 IPR003690 GO:0003690|GO:0006355
Cca01g02466 364 SMART mt_12 68 98 IPR003690 GO:0003690|GO:0006355
Cca01g02466 364 Gene3D Transcription termination factor 3, mitochondrial 115 349 IPR038538 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca01g02466 mTERF 8.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02466 K15032 - gmx:100799629 580.482