LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca01g02465	ATGtcgtcttcgtcatccaaatccagaccacaatggatctacgatgtgttcatcaatttcaggggaggaggcaccaggaatttcgtttctcatctctattacgccctcttaaatgccggagtcaacactttcttcgatgaggagaatctactcaagggaatgcaactggaggaactaatgcgagcaatagaagggtctcagatagcaatagttgttttctccgaaacctataccgaatccacttggtgtctcactgagcttgagaaaatcatcgaatgccacgaaacttgtggccaattagttgtgcccatattttacgatgtggacccttccgttgtacgtcatccgattggtcattttgaaaacgctttgaaagcagctgcagaaaaaaagcatttaccagaacttttagaatatgggttacggaggtggagaacggcactcaccaaagctgcaaatttctctggTTGGGATGTGAGGAATCGCAGGAATAAGGCTAAACTAGTGAAGGAAATTGTTGAGGACGTTCTCACAAAACTAGACTACGCACTCTTGTCTATTACTGAATTTCCTGTTGGATTGGAACCCCGTATGCAACAAGTGATTGGATTTATTGAAAATCAATCCACCAAGGTCAGTATTATAggaatatggggaatgggaggatctggcaaaactaccatagccaaagccatctacaatcaaattcatcgtagattcatggataaaagtttcattgaaaatattagagaggtgtgtgagacagatggtagaggacatgttattttacaagaacaacttctttcagatgtcctaaaaacaaaggtgaagatacatagcgttggaatgggaaaaactatgatcgagaacagactttctgggaaaagggcactcattgtacttgatgatgtcaacgagtttggccaattaaaagacctatgtggaaatcgtaaatggttcggtcaaggaagtgtaatactcataacaactagagatctacacttgcttgacctacttaaagttgattatgtttatgagatggataaaatggatgaagatgagtcacttgagctttttagttggcatgcttttagagaagcaaaaccagtagaagacttcaatgaacttgcaagaaatgtagttgcttattgtggagggctacctctagctcttgaagttcttggttcttatttaattgagaggacaaagaaagattgggaaagtgtattgtcaaaactaaaaataattcccaatgatcaagttcaagagaaattaagaataagctttgatggtttacgtgatcacatggaaaaggatatattccttgatatatgttgtttctttatcggtaaagatagagcctatgttacggagatactaaatggttgtggactacatgctgatattggaataacagttcttatagagcgtagtctcttaaaagttgaaagaaacaacaaacttggaatgcatcaattgctacgggacatgggaagagaaataatttgtgaaagttcaagaacagaacctgggaagcgcagtcgattgtggtttcacgaggatgtacttgatgtattggcaaagaatactgggacagaagctattgagggattggctctgaaattccatttcaccggtagagattgcttcaaagcttatgcttttgaggaaatgaagagattgagactgttgcaacttgatcatgtactactcacaggagattatggatatctttccaagaaactgagatggatttgttggcaagggtttccttcaaaatacataccaaacaaattttatctggaaggtgttattgctattgatttaaaacacagtaatcttcgactcgtctggaaagaaccccaggttttgccgtggctgaaattcctcaatcttagtcactccaagtacttgacagaaacccctgactttttaaaactaccaagtcttgaaaagctcattctcaaagattgtccaagtttgtgcaaggtacacaaatccattggagatctccgcaatcttttattgataaatttgaaggactgtaccagcctaggcaatctcccaagagagatttataagttgaaatctgtgaaaactctcatcctttcgggttgtttgaagattgacaaattggaggaagatatagtgcagatggaatccttgacaactctatttgctgaaaatactgctgtgaaacaagtgcccttttcaatagtaagttcaaaaagcattggttatatatccctaTGTGGATATGAAGGATTATCTCGTAATGTTTTTCCTTCTATCATTCGATCTTGGATGTCACCAACAATGAATCCCCTATCTTATTTTCGTCCATTTTGTACCACATCATCATATCTAGTTTCCATGGACATGCAAAGTGATAATTTGGGTGATCTTGGGCCAATGCTTAGCAACCTCTCAAATCTTCGAAGTGTTTTGGTGCAATGTGACACAGAATTTCAACTATCTAAACAAGTGCAAACAATTTTGAACGACGTATTTGGTGTAAATTTTACAGAATTGGAAATAACATCACGTACATCACAAATTTCAAAGCAATACTTGCGGTCTTATTTGATTGGAATTGGAAGTTACGACCAAGAAGTCTTCAATACTCTCAGCAATAGCATATCTGAGGGATTGGCAGCCAATGAGGGTTTTGATGTTTTTCTCTCAGGTGGCAATGATCCTTCTTGGTTGACCAATATAGGTGAGGGGCATGCAGTGTATTTCACTGTGCCTGAGGGTTGTTGCATGAAGGGAATGACTTTGTGTGTTGTTTATTCATCAAGCCCTGAAACCACGGAACCGGAAGAATGTCTTATTAGTGTCATAATGGTTAATTATACAAAGTGCACTATCCAGATACACAAGCGAGACACAGTAATTTCCTTCAATGATGTGGATTGGCAGGGCATAATATCACATTTGGGACCTGGAGACAAGGTGGAGATTTTTGTGATTTTTGGGCATGAATTGGTGGTAAAGAAGACAGTTGTTTATCTGATTTATGGTGAATCAATTGACTTGGAAATGGATCCTTCTCCCAAGCCAAAGAAAGAGACAAAGAAAAAGGCCATTGGAAGATTCATAAAGAAAATTGTAACGAGCAAGACTCAAGAACAATAA	3138	0.1313	MSSSSSKSRPQWIYDVFINFRGGGTRNFVSHLYYALLNAGVNTFFDEENLLKGMQLEELMRAIEGSQIAIVVFSETYTESTWCLTELEKIIECHETCGQLVVPIFYDVDPSVVRHPIGHFENALKAAAEKKHLPELLEYGLRRWRTALTKAANFSGWDVRNRRNKAKLVKEIVEDVLTKLDYALLSITEFPVGLEPRMQQVIGFIENQSTKVSIIGIWGMGGSGKTTIAKAIYNQIHRRFMDKSFIENIREVCETDGRGHVILQEQLLSDVLKTKVKIHSVGMGKTMIENRLSGKRALIVLDDVNEFGQLKDLCGNRKWFGQGSVILITTRDLHLLDLLKVDYVYEMDKMDEDESLELFSWHAFREAKPVEDFNELARNVVAYCGGLPLALEVLGSYLIERTKKDWESVLSKLKIIPNDQVQEKLRISFDGLRDHMEKDIFLDICCFFIGKDRAYVTEILNGCGLHADIGITVLIERSLLKVERNNKLGMHQLLRDMGREIICESSRTEPGKRSRLWFHEDVLDVLAKNTGTEAIEGLALKFHFTGRDCFKAYAFEEMKRLRLLQLDHVLLTGDYGYLSKKLRWICWQGFPSKYIPNKFYLEGVIAIDLKHSNLRLVWKEPQVLPWLKFLNLSHSKYLTETPDFLKLPSLEKLILKDCPSLCKVHKSIGDLRNLLLINLKDCTSLGNLPREIYKLKSVKTLILSGCLKIDKLEEDIVQMESLTTLFAENTAVKQVPFSIVSSKSIGYISLCGYEGLSRNVFPSIIRSWMSPTMNPLSYFRPFCTTSSYLVSMDMQSDNLGDLGPMLSNLSNLRSVLVQCDTEFQLSKQVQTILNDVFGVNFTELEITSRTSQISKQYLRSYLIGIGSYDQEVFNTLSNSISEGLAANEGFDVFLSGGNDPSWLTNIGEGHAVYFTVPEGCCMKGMTLCVVYSSSPETTEPEECLISVIMVNYTKCTIQIHKRDTVISFNDVDWQGIISHLGPGDKVEIFVIFGHELVVKKTVVYLIYGESIDLEMDPSPKPKKETKKKAIGRFIKKIVTSKTQEQ	1045

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca01g02465	1045	SUPERFAMILY	L domain-like	490	815	-	-
	Cca01g02465	1045	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	184	444	IPR027417	-
	Cca01g02465	1045	SMART	AAA_5	211	351	IPR003593	-
	Cca01g02465	1045	Gene3D	-	349	433	IPR042197	-
	Cca01g02465	1045	SMART	till_3	13	154	IPR000157	GO:0007165
	Cca01g02465	1045	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	25	1007	IPR044974	GO:0006952
	Cca01g02465	1045	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	25	1007	-	-
	Cca01g02465	1045	Pfam	TIR domain	14	183	IPR000157	GO:0007165
	Cca01g02465	1045	CDD	AAA	192	333	-	-
	Cca01g02465	1045	Pfam	NB-ARC domain	197	414	IPR002182	GO:0043531
	Cca01g02465	1045	Gene3D	-	187	344	IPR027417	-
	Cca01g02465	1045	Gene3D	-	8	186	IPR035897	-
	Cca01g02465	1045	SUPERFAMILY	Toll/Interleukin receptor TIR domain	3	157	IPR035897	-
	Cca01g02465	1045	ProSiteProfiles	TIR domain profile.	12	180	IPR000157	GO:0007165
	Cca01g02465	1045	Gene3D	Ribonuclease Inhibitor	552	856	IPR032675	-
	Cca01g02465	1045	PRINTS	Disease resistance protein signature	214	229	-	-
	Cca01g02465	1045	PRINTS	Disease resistance protein signature	291	305	-	-
	Cca01g02465	1045	PRINTS	Disease resistance protein signature	384	398	-	-
	Cca01g02465	1045	PRINTS	Disease resistance protein signature	669	685	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca01g02465	Cca-Chr1	53880525	53886837	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca01g02465	14	739	WRKY Transcription Factor Family	AT4G12020	29.679	2.12e-78	280

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca01g02465	-		-	gmx:100815297	1713.35