LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca01g02463	ATGTcttactcttcatcgtcctcgaaattaaaaccccaatggagatacgatgtgttcatcaatttcaggggggaagatactcgtaagaattttgtttctcatctctattctgcccttgcaaacgcaggagtaaacactttcctggacgatgagaagcttcccaagggacaagagctgaaatcagaactgttcgacgcaatagaagggtctcaaatatcaatcgttgttttctcccaaaagtatattcaatctagctggtgtcttgatgaactgcacaagatcatggaatgtcatgcattcagaggccaagtggttttgcccgtattttacgatgttgtcccttcATTTTTACGTAAAGTGCAAGACGTTTCTTTTGGAGTCTTTTGTGCAAATAGTGACCTCCACCGGATAGAACCATGGAAGAAAGCACTAGCCCGAGCGGCAACTTTGGTTGGTTGGGATGTGAGAAATTACGGAAATGAAAACGATGTCGTGAAGGAAATTATTTCTGCAGTTTTGAAAAGAATAGACAGAACATATTTGTCTATCACTGACTTcccagtcggattagaatctcgtgtgcaacgtattgttggctttgtaagaaaccaaacaaaaggaacatgtatgttagggatttggggaatgggagggattggtaaaacaaccatagccaaagccatttacaatgaaattcgtcaggagttcgaatatcaaagtttccttgcaaatattagagaagtttggggaagagatcggggccagattgaattacaaaagcaacttctttcagatgtccttaaaacagagaagctgaaggtgcatagcattgactggggaaaaggtatgatcaaggaaaggctttgcacaaaaagagtacttgttgtacttgatgacgtgaataagtttgaacagttaaatgcactatgtggaaatcgtgattggattggtcgaggaagtgtgataatcattacaaccagagacaaacgtctactccttgaagttgaccatgtacaacaagtggatgaaatgaatgagagtgagtcccttgagcttttcagttggcatgcttttagggaagcaaaaccaacaaaaggcttcctagaactctcaaaacaagtagtcaaatactgtggaggattaccactggctcttgaagttcttggatcttacttgtacaagagaagaaaagaagagtggcaaagtgtattatcaaaactaaaagaaatacccaatggcgaaatacaagagaaattgaaaataagctatgacggtttaacggatgatacggagaaggatatatttcttgacatatgctgcttctttattggcaaggacagagcctatgtcacagagatactaaatggctgtggacttcatgctgatattggaataacagtcctggtagaaaggagcctaatcacggttgaaaagaataataaactcgaaattcatgatttgctacgtgacatggggagagaaattgttcgtcaaagttcaccaaaaccacagaagcgcagtcgattgtgggttcatgatgatgttcttgagacattgacagaagatactggaacagaagccattgagggattggctttgaagttgcaaagaactaccagagttcgcttcagtactgaaacatttgagaaaatgaagagactgagacttttgcaacttgatcatgtacaacttgctggagattatcggcatcttcccaaacatctgagatgggtctattggcaaggattttcattaacatacatacctgacaactttgatcagggagatgtagttgctattgacttaaaacacagttatcttaaactagtatggaaggagccccagttgctggaaaggctaaaattcctcaatcttagtcattccaagtacttatcaaagacccctgatttttcaaaattaccaaatcttgagagcctcattctcaaagattgtccaagcttgtatgaggtacacaattccattggagatctaggtaatcttcttctgttaaatttgaaggattgtacttgccttcggaatctcccaatgatattttataagttgaagtctttaaaaacactcatcctttctgggtgtttgaagattgacaagttagaagaagacatagtgcagatggagtccttaacaactctaatcgcagacaatactggtctaaaacaagtgcccttttctatagtaagatCCAAAAGGATTGGATATATATCCCTTTGTGGATATGAAGGATTGGCACGTGATGTATTTCCTTCTCTCGTATGGTCTTGGATGTCACCAACAAGAGGTCTTGTATCCTGTATTCAATCATTTGGGAGCACGTTGACATCTGTAGTCTCTGTGGATATACAGGATAAAAATTTGGGTAACCTATTATCAAAGCTTAGTGAATTTTCAAAACTTAAAAGTATTAGCGTACAATGTGACTCAGATTTTCAACTAACTCAAGAATTAAGAATAATTTTGGACAACTTGTGCAATGTAAATTTTTCTGACAATGAAACAACGCCCGCATCACAAGTTTCAGAAAATTCTACTGTATCTCATTTGATTGGAATTGGAAGTTACCACCAACACATCAATATGCTTAGCAAGACTATATCAGAGGTACTGGAAACCCGTAGTTCCAGTGATTTTCTCCTTCCAGGAGACAATTATCCTTATTGGTTAGCCTATACAGGGAAAGGATACTCGGTACCTTTTCAAGTGCCTGATGATGGTGATTGTCGCATGAAGGGGATCATTTTGTGTGTTGTTTATTCATCAACCCCTGAAATGGCAACTGAAAATCTCACTAGTGTCTTCATCTTTAATTACACGAAGTGCACCGTTGAGATATACAAGCAAGCAACAACAATGTCCTTTACTGATGAAGATTGGCAGCGAATAATATCAAATCTAGGACCTGGTGACAATGTGGAGATTTTTGTTGCTTTTGGGCATGAAATGATTGTTAAGAAGACAGCTGTTTATCTAATATATGGTCAGCCAATTACAACCAGAATGGAGCCATTGCCTGAAGTGAGTGAGCACCTGTCACCAGATGTGGAAATGGACTCGTCTCTTAATGTCCAAATGGAGCCACCAAAGAAGCCCAAGAAAAATATCTTTACAAAAATTGCTAAGATGAGAGTATGTTTATGCTTGAACTAG	3165	0.1428	MSYSSSSSKLKPQWRYDVFINFRGEDTRKNFVSHLYSALANAGVNTFLDDEKLPKGQELKSELFDAIEGSQISIVVFSQKYIQSSWCLDELHKIMECHAFRGQVVLPVFYDVVPSFLRKVQDVSFGVFCANSDLHRIEPWKKALARAATLVGWDVRNYGNENDVVKEIISAVLKRIDRTYLSITDFPVGLESRVQRIVGFVRNQTKGTCMLGIWGMGGIGKTTIAKAIYNEIRQEFEYQSFLANIREVWGRDRGQIELQKQLLSDVLKTEKLKVHSIDWGKGMIKERLCTKRVLVVLDDVNKFEQLNALCGNRDWIGRGSVIIITTRDKRLLLEVDHVQQVDEMNESESLELFSWHAFREAKPTKGFLELSKQVVKYCGGLPLALEVLGSYLYKRRKEEWQSVLSKLKEIPNGEIQEKLKISYDGLTDDTEKDIFLDICCFFIGKDRAYVTEILNGCGLHADIGITVLVERSLITVEKNNKLEIHDLLRDMGREIVRQSSPKPQKRSRLWVHDDVLETLTEDTGTEAIEGLALKLQRTTRVRFSTETFEKMKRLRLLQLDHVQLAGDYRHLPKHLRWVYWQGFSLTYIPDNFDQGDVVAIDLKHSYLKLVWKEPQLLERLKFLNLSHSKYLSKTPDFSKLPNLESLILKDCPSLYEVHNSIGDLGNLLLLNLKDCTCLRNLPMIFYKLKSLKTLILSGCLKIDKLEEDIVQMESLTTLIADNTGLKQVPFSIVRSKRIGYISLCGYEGLARDVFPSLVWSWMSPTRGLVSCIQSFGSTLTSVVSVDIQDKNLGNLLSKLSEFSKLKSISVQCDSDFQLTQELRIILDNLCNVNFSDNETTPASQVSENSTVSHLIGIGSYHQHINMLSKTISEVLETRSSSDFLLPGDNYPYWLAYTGKGYSVPFQVPDDGDCRMKGIILCVVYSSTPEMATENLTSVFIFNYTKCTVEIYKQATTMSFTDEDWQRIISNLGPGDNVEIFVAFGHEMIVKKTAVYLIYGQPITTRMEPLPEVSEHLSPDVEMDSSLNVQMEPPKKPKKNIFTKIAKMRVCLCLN	1054

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca01g02463	1054	SUPERFAMILY	L domain-like	533	841	-	-
	Cca01g02463	1054	Gene3D	-	180	342	IPR027417	-
	Cca01g02463	1054	CDD	AAA	188	328	-	-
	Cca01g02463	1054	Gene3D	-	10	179	IPR035897	-
	Cca01g02463	1054	Gene3D	Ribonuclease Inhibitor	509	878	IPR032675	-
	Cca01g02463	1054	PRINTS	Disease resistance protein signature	210	225	-	-
	Cca01g02463	1054	PRINTS	Disease resistance protein signature	287	301	-	-
	Cca01g02463	1054	PRINTS	Disease resistance protein signature	378	392	-	-
	Cca01g02463	1054	PRINTS	Disease resistance protein signature	686	702	-	-
	Cca01g02463	1054	ProSiteProfiles	TIR domain profile.	14	176	IPR000157	GO:0007165
	Cca01g02463	1054	SUPERFAMILY	Toll/Interleukin receptor TIR domain	5	153	IPR035897	-
	Cca01g02463	1054	Gene3D	-	343	427	IPR042197	-
	Cca01g02463	1054	SMART	till_3	15	150	IPR000157	GO:0007165
	Cca01g02463	1054	Pfam	NB-ARC domain	192	419	IPR002182	GO:0043531
	Cca01g02463	1054	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	19	998	IPR044974	GO:0006952
	Cca01g02463	1054	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	178	438	IPR027417	-
	Cca01g02463	1054	SUPERFAMILY	"Winged helix" DNA-binding domain	414	519	IPR036390	-
	Cca01g02463	1054	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	19	998	-	-
	Cca01g02463	1054	Pfam	TIR domain	16	178	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca01g02463	Cca-Chr1	53856061	53866588	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca01g02463	16	755	WRKY Transcription Factor Family	AT4G12020	30.566	9.30e-86	303

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca01g02463	-		-	vun:114165127	1572.37