Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02457 ATGGAAAACCAGTTCTTTCTAAATGCTGGGGTGTCACCAACACCACACCCCCTTCACTTTGAGCCTTCACCACCTCCTTCTTCAATGCCCTCTTGGCAATCACTCACACCAACCATGGGAATTCAACCAACAGTTCTGAATTGTGCCTCTGAGCAAACCCAAGATTGCTTTTACAGCCCCAATTGGGACAAGTCAACAGATCATGACCATCGTCATCACTTTGATTCCTCAGCACTCAGTTCAATGGCCTCATCTCCTGCAGCAGCAGCAACATCCAACCCTAACATGTCCAATGAGAATTTCATCATCAGGGAATTGGTGGGGAAATTGGGAGCTATTGGAAGCTCTGATGAGATCCCACAACACTCCCCTCACCCTTTGGTTGTGGCATCTTCTTACATGAATAATGGAAATAGCAGCACCAACACTTCATGCTACACCACTCCTTTGAGTTCCCCACCAAAGGGGAACATTGTCCACAGTTTGGTGAATGAGAAGTTGGCAAATTTGGGAGGCAAGTCAATGGCTTTGAATTCCAGTGTAGCCGAATTCTCAGCTGATCCTGGCTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGCAGCAGGAGTTTCAATGATAGGAGTGCCCAATTCGGGGTGAACAATGGTGAATTGGCTCAGAGATCTGCACCAGTAATGGAACACGGCAAGTTACCAAGAGTCTCAAGTAGTCCATTGCTGAAAACACTTGGATCTCAAATTGGTACCCCGGAGAACAAGAATTCTGCATTTCAGGAGCAGGACAAAATGGAAGTGACCAATTCTCAAGAGGAATCTACAATTTCTGAGCAAACCCCAAATGGAGAAACTGGGGGGAAAACTTCTCAAGATATGAATTCCAGGAAAAGAAAAGCTTCTTCCAAAGGAAAAGCCAAAGAAACTTCAAACTCTACTAATCCCACTAAGGGTGTTGAAGCTAGTGATGATTCAAATTCAAAGCGCTGCAAGACAAATGAGGGTGAAGGAAATGAAAACGGGACAGTGAAAGTTGAGGAAGAGTCTAGAGCAGTGGATGAGAAACAAAAGAAAAGTAACTCAAAACCTCCTGAGCCTCCAAAAGATTACATTCATGTAAGAGCAAGAAGAGGCCAAGCCACTGACAGCCATAGTCTTGCAGAACGTGTACGGAGAGAGAAAATCAGTGAGAGGATGAAGCTGCTCCAAGATCTTGTACCAGGTTGCAACAAGGTCACTGGCAAGGCACTTATGCTAGATGAAATTATAAATTATGTTCAGTCATTGCAACGACAAGTTGAGTTCCTGTCTATGAAGTTGGCTTCTGTTAACACAAGGATGGATCTTAGTATTGAGAGTCTTACTTCAAAAGATGTATTTCAATCAAATAATTCTTTGGCAACACACCCAAATCCAATATTCCCATTAGATTCCTCAGCACAAGCCTTTTATGGACACCAGCCTCAGCAAAATCCATTTATCCATAATAACACACCTAACAGAACGGTGTCCCACTGCTCAGTGGACCCATTAGATACTTCTTTGTGCCAAAATCTTGGCATGCTGTTACCTCCCCTAAATGGGTTTAATGAAGGTGGCTCTCAGGTAATAATAAGTTTCTTCTACTTTTCTATACAAATTAATATTCAAAGAAAAAAGGTCCATTACATTACTACAATGTTTTGA 1683 0.429 MENQFFLNAGVSPTPHPLHFEPSPPPSSMPSWQSLTPTMGIQPTVLNCASEQTQDCFYSPNWDKSTDHDHRHHFDSSALSSMASSPAAAATSNPNMSNENFIIRELVGKLGAIGSSDEIPQHSPHPLVVASSYMNNGNSSTNTSCYTTPLSSPPKGNIVHSLVNEKLANLGGKSMALNSSVAEFSADPGFAERAAKFSCFGSRSFNDRSAQFGVNNGELAQRSAPVMEHGKLPRVSSSPLLKTLGSQIGTPENKNSAFQEQDKMEVTNSQEESTISEQTPNGETGGKTSQDMNSRKRKASSKGKAKETSNSTNPTKGVEASDDSNSKRCKTNEGEGNENGTVKVEEESRAVDEKQKKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRMDLSIESLTSKDVFQSNNSLATHPNPIFPLDSSAQAFYGHQPQQNPFIHNNTPNRTVSHCSVDPLDTSLCQNLGMLLPPLNGFNEGGSQVIISFFYFSIQINIQRKKVHYITTMF 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02457 560 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 376 447 IPR036638 GO:0046983
Cca01g02457 560 MobiDBLite consensus disorder prediction 17 31 - -
Cca01g02457 560 MobiDBLite consensus disorder prediction 321 369 - -
Cca01g02457 560 PANTHER BHLH TRANSCRIPTION FACTOR 2 540 - -
Cca01g02457 560 CDD bHLH_AtBPE_like 368 453 - -
Cca01g02457 560 Coils Coil 425 445 - -
Cca01g02457 560 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 378 428 IPR011598 GO:0046983
Cca01g02457 560 SMART finulus 384 434 IPR011598 GO:0046983
Cca01g02457 560 MobiDBLite consensus disorder prediction 1 36 - -
Cca01g02457 560 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 540 IPR024097 GO:0006355
Cca01g02457 560 MobiDBLite consensus disorder prediction 305 320 - -
Cca01g02457 560 MobiDBLite consensus disorder prediction 223 369 - -
Cca01g02457 560 Pfam Helix-loop-helix DNA-binding domain 382 429 IPR011598 GO:0046983
Cca01g02457 560 MobiDBLite consensus disorder prediction 239 289 - -
Cca01g02457 560 Gene3D - 375 451 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02457 Cca-Chr1 53800852 53804320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02457 1 550 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 42.424 4.59e-113 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca01g02457 HLH 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02457 - - gmx:100801233 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01239 07 31551675 31552313 Cca01g02457 01 53800852 53804320 PCT