Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02455 ATGGGTATTTCCAGGGATTCTATGCACAAGAGGCGTGCCACTGGTGGCAAGAAGAAGGCCTGGAGGAAGAAGAGGAAGTATGAGCTTGGTCGTCAGCCTGCTAACACTAAGCTATCAAGCAACAAGACAGTCAGGAGGATCCGTGTTAGAGGTGGCAATGTGAAATGGAGGGCACTGAGATTGGATACTGGAAATTACTCCTGGGGAAGTGAAGCTGTAACTCGCAAGACTCGTATACTTGATGTGGTTTACAATGCCTCAAACAATGAGCTTGTGCGAACTCAGACACTTGTCAAAAGTGCTATTGTTCAGGTTGATGCTGCTCCATTTAAACAGTGGTACCTTCAGCACTATGGTGTTGAGATTGGTAGGAAAAAGAAGACAGCTGCCAAGAAGGATTTTGCTGAGGAGGGtgatgctactgctgttgctgctgcAGAAGAATCCAAAAAGAGTAATCATGTGCAGAGAAAATTGGAGAAGCGCCAGAAGGATCGAAAGCTTGATCCCCACATTGAGGAGCAGTTTGGTGGTGGTCGTTTGCTTGCTTGCATTTCATCTCGACCCGGTCAATGTGGCCGATCCGATGGCTACATTCTGGAAGGTAAGGAGTTGGAATTTTACATGAAGAAACTCCAAAGAAAGAAGGGAAAGGGCGCTGCTTGA 666 0.4489 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAKKDFAEEGDATAVAAAEESKKSNHVQRKLEKRQKDRKLDPHIEEQFGGGRLLACISSRPGQCGRSDGYILEGKELEFYMKKLQRKKGKGAA 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02455 221 MobiDBLite consensus disorder prediction 145 170 - -
Cca01g02455 221 MobiDBLite consensus disorder prediction 1 41 - -
Cca01g02455 221 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Cca01g02455 221 CDD Ribosomal_S8e_like 5 200 - -
Cca01g02455 221 PANTHER 40S RIBOSOMAL PROTEIN S8 1 221 IPR001047 GO:0003735|GO:0005840|GO:0006412
Cca01g02455 221 TIGRFAM eS8: ribosomal protein eS8 1 202 IPR001047 GO:0003735|GO:0005840|GO:0006412
Cca01g02455 221 MobiDBLite consensus disorder prediction 11 26 - -
Cca01g02455 221 Gene3D - 32 119 - -
Cca01g02455 221 Gene3D - 120 216 - -
Cca01g02455 221 MobiDBLite consensus disorder prediction 150 170 - -
Cca01g02455 221 Pfam Ribosomal protein S8e 5 200 IPR022309 -
Cca01g02455 221 PANTHER 40S RIBOSOMAL PROTEIN S8 1 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02455 Cca-Chr1 53740659 53742949 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02455 1 209 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 82.775 3.11e-125 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02455 K02995 - gmx:100794937 400.979