Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca01g02454 | ATGGACGAGGATTTCGACCTGCCAGCGCCGGAACCCATGAACGAGGACTTCGACTTTGCCGGCGCCGGTGACGGAGACAACCCCGTCTTCAAGGTCGGCGAGGAGAAGGAGATTGGAAAACAGGGCCTTAAGAAGAAACTCCTCAAAGAAGGTCAAGGATGGGATACCCCTGAAGCTGGTGATGAAGTTCAAGTTCACTATACTGGGACGTTGCTTGATGGAACCAAGTTTGATTCCAGCAGAGACAGGGGAACTCCATTCAGTTTCACGCTTGGACAAGGGCAAGTTATTAAAGGATGGGATCAAGGTATTATAACAATGAAGAAAGGTGAGAATGCCCTTTTCACCATCCCAGCTGAGCTAGCTTATGGTGAATCTGGTTCTCCTCCAACGATTCCTCCCAATGCAACTCTTCAATTTGACGTGGAGCTACTGTCTTGGACTAGTGTAAAAGACATATGCAAGGATGGTGGTTTATTTAAGAAGATACTTACTGAGGGAGATAAATGGGAGAATCCCAAGGATCCTGATGAAGTATTAGTGAAGTATGAAGCACATCTTGAAGATGGAACTCTTGTGGCAAAATCTGATGGAGTGGAATTCACAGTTAATGAAGGTCACTTTTGTCCTGCGTTGTCAAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAGGTGATTCTGACTGTGAAGCCACAATATGGGTTTGGTGAGAAAGGTAAGCCAGCACATGGTGACAAAGGTGCAGTTCCACCAAATGCAACATTGCACATTACTCTCGAGTTAGTTTCTTGGAAGACTGTGTCAGAAGTAACTGATGACAAGAAGGTCATTAAGAAGATCCTCAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGAGCCGTTGTGAGATTGAAAGTAATTGGAAAGCTGCAAGATGGTACTTTATTTTTGAAGAAAGGCCATGACGATGAAGGGGAGCTGTTTGAATTCAAAACAGATGAGGAGCAAGTAATTGATGGGCTTGATAGAGCTGTGTTGACTATGAAGAAGGGTGAGGTAGCGTTGCTGACTGTTGCCCCTGAATATGCTTTTGGTTCATCAGAGTCTCAGCAGGAACTGGCTGTGATCCCGCCTAACTCCACTTTGTATTATGAGGTTGAGTTGGTATCATTTGTGAAGGAGAAGGAATCCTGGGATATGAACACACAAGAGAAGATTGAAGCTGCTGGTAAGAAGAAAGAAGAAGGGAATGCACTATTTAAAGCTGGTAAATATACAAGATCTTCTAAAAGATATGAGAAGGCTGTAAAGTTCATAGAGTATGATACCTCCTTCAGCGAAGAGGAGAAAAAGAGCTCCAAGGCATTGAAGGTTGCCTGTAATCTAAACAATGCAGCATGCAAGTTGAAGTTAAAAGATTACAAACAAGCGGAGAAATTGTGCACAAAGGTATTGGATCTTGAGAGTACTAACGTGAAGGCTCTCTATAGAAGGGCCCAGGCATATATCCAGTTGGCTGACTTAGATTTGGCTGAATTTGATATCAAGAAGGCTCTTGAGATTGACCCTAACAACAGAGATATCAAGCTTGAGTACAAGACTTTGAAGGAAAAGATGAAGGAGTATAACAAAAAAGAGGCAAAATTTTATGGAAATATGTTCAACAAACTGCATAAGCTAGATTCTCTTGACAGTAATAAACCAGCGTCCAAGGATGCCCAACCCATGAATATCGACAGCAAGGCATAA | 1731 | 0.431 | MDEDFDLPAPEPMNEDFDFAGAGDGDNPVFKVGEEKEIGKQGLKKKLLKEGQGWDTPEAGDEVQVHYTGTLLDGTKFDSSRDRGTPFSFTLGQGQVIKGWDQGIITMKKGENALFTIPAELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGLFKKILTEGDKWENPKDPDEVLVKYEAHLEDGTLVAKSDGVEFTVNEGHFCPALSKAVKTMKKGEKVILTVKPQYGFGEKGKPAHGDKGAVPPNATLHITLELVSWKTVSEVTDDKKVIKKILKEGEGYERPNEGAVVRLKVIGKLQDGTLFLKKGHDDEGELFEFKTDEEQVIDGLDRAVLTMKKGEVALLTVAPEYAFGSSESQQELAVIPPNSTLYYEVELVSFVKEKESWDMNTQEKIEAAGKKKEEGNALFKAGKYTRSSKRYEKAVKFIEYDTSFSEEEKKSSKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLESTNVKALYRRAQAYIQLADLDLAEFDIKKALEIDPNNRDIKLEYKTLKEKMKEYNKKEAKFYGNMFNKLHKLDSLDSNKPASKDAQPMNIDSKA | 576 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca01g02454 | 576 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 56 | 145 | IPR001179 | GO:0003755 | |
| Cca01g02454 | 576 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 171 | 262 | IPR001179 | GO:0003755 | |
| Cca01g02454 | 576 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 287 | 383 | IPR001179 | GO:0003755 | |
| Cca01g02454 | 576 | Gene3D | - | 151 | 265 | IPR046357 | GO:0003755 | |
| Cca01g02454 | 576 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 385 | 556 | - | - | |
| Cca01g02454 | 576 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 1 | 272 | - | - | |
| Cca01g02454 | 576 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 274 | 385 | - | - | |
| Cca01g02454 | 576 | SUPERFAMILY | FKBP-like | 35 | 153 | - | - | |
| Cca01g02454 | 576 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 293 | 386 | IPR001179 | GO:0003755 | |
| Cca01g02454 | 576 | SUPERFAMILY | TPR-like | 391 | 551 | IPR011990 | GO:0005515 | |
| Cca01g02454 | 576 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 60 | 148 | IPR001179 | GO:0003755 | |
| Cca01g02454 | 576 | SUPERFAMILY | FKBP-like | 152 | 267 | - | - | |
| Cca01g02454 | 576 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 176 | 265 | IPR001179 | GO:0003755 | |
| Cca01g02454 | 576 | Gene3D | - | 266 | 388 | IPR046357 | GO:0003755 | |
| Cca01g02454 | 576 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 1 | 272 | - | - | |
| Cca01g02454 | 576 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 385 | 556 | - | - | |
| Cca01g02454 | 576 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 274 | 385 | - | - | |
| Cca01g02454 | 576 | Gene3D | - | 33 | 150 | IPR046357 | GO:0003755 | |
| Cca01g02454 | 576 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Cca01g02454 | 576 | MobiDBLite | consensus disorder prediction | 556 | 576 | - | - | |
| Cca01g02454 | 576 | SMART | tpr_5 | 452 | 485 | IPR019734 | GO:0005515 | |
| Cca01g02454 | 576 | SMART | tpr_5 | 486 | 519 | IPR019734 | GO:0005515 | |
| Cca01g02454 | 576 | SMART | tpr_5 | 403 | 436 | IPR019734 | GO:0005515 | |
| Cca01g02454 | 576 | SUPERFAMILY | FKBP-like | 270 | 403 | - | - | |
| Cca01g02454 | 576 | ProSiteProfiles | TPR repeat profile. | 486 | 519 | IPR019734 | GO:0005515 | |
| Cca01g02454 | 576 | Coils | Coil | 519 | 539 | - | - | |
| Cca01g02454 | 576 | Gene3D | Tetratricopeptide repeat domain | 389 | 546 | IPR011990 | GO:0005515 | |
| Cca01g02454 | 576 | Pfam | Tetratricopeptide repeat | 486 | 519 | IPR001440 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca01g02454 | Cca-Chr1 | 53728783 | 53734129 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca01g02454 | 1 | 560 | Calmodulin-binding Proteins | AT3G25230 | 79.679 | 0.0 | 893 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca01g02454 | K09571 | - | gmx:100803189 | 1041.18 |