Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02448 ATGGAACCTAACGGGACTGCTCATCTTAGGATTCCGTTATTGCAGACCCCGGAAGACGGCGCCGTTAAGACCGTTACGTTCCAACTAAGCGACATCAAGTGTGCCTCGTGTGTCAATTCCGTTGAGTCCGTCGTTGGGAGCCTTAACGGCGTCAAAAGCGTCGCCGTTTCGCCACTTGATGGCCGAGCCGCAATCAAGTTTGTCCCTAAGCTCGTTACCGCGAAACAAATAAGAGAAAGTATAGAGGAGAGTGGTTTTGGAGTTGATGAGCTTCATGAAAAGGACATAGCGGTGTGCCGAGTGAAAATTAAAGGAATGGCATGCACAAGCTGCTCCGAGTCTGTTGAGAATGCCCTTAAAATGGTTGAAGGGGTGAAAAATGCAATTGTTGGTCTCGCTTTGGAGGAGGCGAAAGTGCACTTTGATCCTAACCTCATCAATGTTGACAAGATAATTGAGGCCATAGAAGATGCGGGTTTTGGGGCTGATCTTATTAGCTCTGGGAATGATGCAAACAAAGTGCATCTAAAGCTTGAAGGGGTTGATTCTGCAGAAGATGTTAATGTAGTGATGTCTTCTCTTGAGTTAGCTGTAGGGGTGAACCATGTTGAGATGGATTTGTCAGAACATAAGGTTACGGTTAGCTATGATCCAGACATTACTGGTCCAAGGTCTCTCATTCATTGTGTTCAGGAAGCTAGCTGTGGCCCCAAGAGGTACCAAGCAACCTTGTACTCTCCTTCGGGGCAAAGAGAAAGGGACAAGGTGAATGAAATCCGTATGTATAGGGACCACTTTTTGTTCAGCTGCTTCTTTTCTGTTCCAGTTTTTGTATTTGCCATGGTGCTTCCTATGCTTCCTCCTTATGGCAACTGGTTAAACTTCAAGATCCACAATATGCTTACACTTGGATTGTTATTAAGATGGATCCTTAGCACGCCTGTGCAATTCATAGTTGGCAAAAGGTTCTATGTGGGATCATATCATGCACTGAAGCGAAAATCTGCTAACATGGATGTGCTGGTTGCGCTAGGCACAAATGCTGCTTATTTTTACTCTCTATATATTTTAATAAAAGCACTGACTTCAGATACATTTGAAGGACAAGATTTCTTTGAGACAAGTTCCATGTTGATATCCTTTATTCTATTAGGGAAATATTTGGAAATTGTGGCTAAAGGGAAAACATCAGATGCTTTAGGAAAGCTGATTCAACTTGTTCCTGATAAAGCTTATTTGGTAGAAATTGATAATGATGGGAATATTCTCACAGAGACTGAAATTGACACTCAACTCATACAAAAGAATGACATAATTAAGATTGTTCCTGGGGCCAAAATTCCCGTTGATGGTACTGTTATAAAAGGACAAAGCTATGCAAATGAAAGTATGATCACTGGGGAGGCAAGACCTGTTGATAAAGGTCCAGGAGACAAGGTTATCAGTGGAACTATCAATGAGAATGGCTGCTTATTGGTTAAGGCTACACATGTCGGATCAGACACTGCACTTTCTCAAATAGTTCAACTCGTTGAAACTGCTCAACTGGCCAAAGCACCAGTTCAAAAACTTGCTGACCATATTTCAAGGGTTTTTGTTCCAATTGTGGTTGTTGTAGCACTAATAACTTGGCTTGGATGGTTCATTCCTGGGGAAGCTGGTATTTACCCTAAACATTGGATACCAAAAGCAATGGACGCATTCGAGCTTGCTTTGCAGTTTGCTATTTCTGTGCTGGTTGTTGCTTGCCCATGTGCTCTGGGTCTTGCAACACCAACTGCAGTCATGGTTGCTTCAGGCATGGGTGCTTCTCAAGGTGTGCTCATCAAGGGTGGAGATGCACTGGAAAAGGCACACAAGGTTAAAATTGTTGTGTTTGACAAGACTGGGACACTAACAGTTGGGAAGCCAGCGGTAGTTAGTGCAGTGCTTTTTTCTGAATTTTCTATGGAAGAGTTATGTGACACGACAATTGCTGTGGAGGCAAGTAGCGAGCACCCATTAGCAAAAGCCGTTGTGGCACATGCGAAGAGGCTGCGCCAGAAATTTGGTTCTTCCAAGGAGGAAGTCCCAGATGTGGATGATTTTGAGGTACACATGGGAGCTGGTGTAAGTGGAAAAGTTGGTGATAGAATAGTTGTAGTTGGAAACAAGAGACTCATGCATGCTTGTAGTGTTCCAATATGTTCCAAGGTTGAGAAGTACATCTCTGAAAATGAAGTTCTGGCTAGAACATGTGTTTTAGTTTCAATTGATGGAAAGATTGCTGGTGCATTCTCTGTAACTGATCCTGTAAAACCAGAGGCTAAACGTGTCATATCTTTCCTCCACTCCATGGGTATCTCGAGCATTATAGTGACTGGTGATAACTGTGCTACTGCAACTGCTATTGCAAATGAAGTGGGTATTGATGAGGTCTTTGCTGAGACAGATCCAGTAGGCAAAGCTGATAAGGTGAAAGAATTGCAGATGAAAGGAGTGACTGTTGCAATGGTAGGAGATGGAATAAATGACTCACCAGCTCTGGTTGCTGCTGATGTTGGTATGGCAATTGGTGCTGGAACTGACATAGCCATAGAAGCAGCTGATATAGTTCTGGTGAAAAGCAGTTTGGAAGATGTGATTACTGCCATAGATCTATCTAGAAAGACGATGTCCCGCATAAGGCTGAACTACATCTGGGCTCTTGGTTACAACATTCTAGGCATGCCAATTGCTGCTGGAGTCTTGTACCCTTTCACGGGAATCAGATTGCCCCCATGGCTTGCTGGTGCTTGCATGGCTGCTTCTTCTCTTAGTGTGCTTTCTTCATCTCTTCTGCTGCAGTTCTATAAAAAACCTTTCCATATATAA 2853 0.4336 MEPNGTAHLRIPLLQTPEDGAVKTVTFQLSDIKCASCVNSVESVVGSLNGVKSVAVSPLDGRAAIKFVPKLVTAKQIRESIEESGFGVDELHEKDIAVCRVKIKGMACTSCSESVENALKMVEGVKNAIVGLALEEAKVHFDPNLINVDKIIEAIEDAGFGADLISSGNDANKVHLKLEGVDSAEDVNVVMSSLELAVGVNHVEMDLSEHKVTVSYDPDITGPRSLIHCVQEASCGPKRYQATLYSPSGQRERDKVNEIRMYRDHFLFSCFFSVPVFVFAMVLPMLPPYGNWLNFKIHNMLTLGLLLRWILSTPVQFIVGKRFYVGSYHALKRKSANMDVLVALGTNAAYFYSLYILIKALTSDTFEGQDFFETSSMLISFILLGKYLEIVAKGKTSDALGKLIQLVPDKAYLVEIDNDGNILTETEIDTQLIQKNDIIKIVPGAKIPVDGTVIKGQSYANESMITGEARPVDKGPGDKVISGTINENGCLLVKATHVGSDTALSQIVQLVETAQLAKAPVQKLADHISRVFVPIVVVVALITWLGWFIPGEAGIYPKHWIPKAMDAFELALQFAISVLVVACPCALGLATPTAVMVASGMGASQGVLIKGGDALEKAHKVKIVVFDKTGTLTVGKPAVVSAVLFSEFSMEELCDTTIAVEASSEHPLAKAVVAHAKRLRQKFGSSKEEVPDVDDFEVHMGAGVSGKVGDRIVVVGNKRLMHACSVPICSKVEKYISENEVLARTCVLVSIDGKIAGAFSVTDPVKPEAKRVISFLHSMGISSIIVTGDNCATATAIANEVGIDEVFAETDPVGKADKVKELQMKGVTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLVKSSLEDVITAIDLSRKTMSRIRLNYIWALGYNILGMPIAAGVLYPFTGIRLPPWLAGACMAASSLSVLSSSLLLQFYKKPFHI 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02448 950 Gene3D - 711 763 IPR023299 GO:0000166
Cca01g02448 950 Gene3D - 632 710 IPR023299 GO:0000166
Cca01g02448 950 Pfam E1-E2 ATPase 408 603 - -
Cca01g02448 950 ProSiteProfiles Heavy-metal-associated domain profile. 173 239 IPR006121 GO:0046872
Cca01g02448 950 SUPERFAMILY Calcium ATPase, transduction domain A 425 511 IPR008250 -
Cca01g02448 950 SUPERFAMILY HMA, heavy metal-associated domain 94 168 IPR036163 GO:0046872
Cca01g02448 950 Pfam Heavy-metal-associated domain 101 160 IPR006121 GO:0046872
Cca01g02448 950 Pfam Heavy-metal-associated domain 26 86 IPR006121 GO:0046872
Cca01g02448 950 Gene3D - 171 242 - -
Cca01g02448 950 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 15 948 - -
Cca01g02448 950 SFLD C1.7: P-type atpase like 607 884 - -
Cca01g02448 950 SUPERFAMILY HMA, heavy metal-associated domain 20 90 IPR036163 GO:0046872
Cca01g02448 950 SUPERFAMILY HMA, heavy metal-associated domain 168 237 IPR036163 GO:0046872
Cca01g02448 950 ProSitePatterns E1-E2 ATPases phosphorylation site. 627 633 IPR018303 -
Cca01g02448 950 Pfam haloacid dehalogenase-like hydrolase 621 846 - -
Cca01g02448 950 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 378 909 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca01g02448 950 Gene3D - 393 515 - -
Cca01g02448 950 Gene3D - 19 89 - -
Cca01g02448 950 SUPERFAMILY Calcium ATPase, transmembrane domain M 370 618 IPR023298 -
Cca01g02448 950 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 338 941 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cca01g02448 950 SFLD p-type atpase 607 884 IPR044492 -
Cca01g02448 950 ProSiteProfiles Heavy-metal-associated domain profile. 98 164 IPR006121 GO:0046872
Cca01g02448 950 SUPERFAMILY HAD-like 623 938 IPR036412 -
Cca01g02448 950 PANTHER ATP7, ISOFORM B 15 948 - -
Cca01g02448 950 CDD HMA 101 162 IPR006121 GO:0046872
Cca01g02448 950 ProSitePatterns Heavy-metal-associated domain. 29 57 IPR017969 GO:0046872
Cca01g02448 950 Gene3D - 90 167 - -
Cca01g02448 950 CDD P-type_ATPase_Cu-like 266 928 - -
Cca01g02448 950 ProSitePatterns Heavy-metal-associated domain. 103 132 IPR017969 GO:0046872
Cca01g02448 950 ProSiteProfiles Heavy-metal-associated domain profile. 24 90 IPR006121 GO:0046872
Cca01g02448 950 PRINTS P-type cation-transporting ATPase superfamily signature 461 475 - -
Cca01g02448 950 PRINTS P-type cation-transporting ATPase superfamily signature 625 639 - -
Cca01g02448 950 PRINTS P-type cation-transporting ATPase superfamily signature 757 768 - -
Cca01g02448 950 PRINTS P-type cation-transporting ATPase superfamily signature 779 789 - -
Cca01g02448 950 PRINTS P-type cation-transporting ATPase superfamily signature 832 851 - -
Cca01g02448 950 PRINTS P-type cation-transporting ATPase superfamily signature 855 867 - -
Cca01g02448 950 TIGRFAM TIGR00003: copper ion binding protein 25 88 IPR006122 GO:0005507
Cca01g02448 950 TIGRFAM TIGR00003: copper ion binding protein 101 161 IPR006122 GO:0005507
Cca01g02448 950 CDD HMA 26 88 IPR006121 GO:0046872
Cca01g02448 950 Gene3D - 592 889 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02448 Cca-Chr1 53670391 53679718 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02448 19 947 Primary Pumps ATPases AT1G63440 57.112 0.0 1061
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02448 K17686 - gmx:100793894 1706.42