Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02444 ATGGAAAGATATAAAATTTTGAGAGAGCTCGGGGATGGTTCCTGCGGTCATGTATATAAAGCCCGTGATATGAGAACATACGAGATTGTCGCTGTCAAAAGGTTGAAAAGAAAGTTTTGTTTCTGGGAAGAATATACCAATTTAAGAGAAGTTAAGGCCCTCCGTAAAATGAATCACCCAAATATCATAAAGTTGAAAGAGGTTGTTAGAGAAAATAATGAACTATTTTTCATTTTTGAATACATGGATTGTAATCTATATCAATTAATAAAGGAGAGAGAAAGGCCCTTTTCAGAAGAAGAGATACGGTGCTTTATGAGGCAAGTACTACAAGGACTTAGTCACATGCACAAGAGAGGATTCTTTCATCGGGATTTAAAACCTGAAAATTTGCTGGTAACGAATGATGTTCTGAAAATTGCTGATTTTGGACTGGCTAGAGAAGTATCATCGATGCCTCCATATACTCAATATGTTTCCACACGGTGGTATCGAGCTCCAGAAGTTTTGTTGCGATCCCCTTGTTACACTCCTGCTGTTGATATGTGGGCAGTTGGTGCTATATTAGCTGAGCTTTTTACTTTGACCCCATTATTTCCTGGTGAAAGTGAAATAGATCAACTGTACAAAATATACCGCATTCTTGGTATGCCAGACTCAACTGCTTTCACCATAGGGGCAGACAATTCTCAGCTATTGGACCTAGTTGCTCGTGATGTTGAAAGTGTTAATGTTTCACCTGTGAAGCTTTCTAATATTATTCCAAATGCTAGTTTGGAAGCTATAGACTTGATCACACAACTGTTACATTGGGACCCATCAAGAAGGCCAGATGCTGATCAGTCATTGCAACATCCATTTTTCCATGTGGATGCATGGGTTCCTTGTCCACTCAGTGATCCACTTGAGCTGAAGCTGAGTAGCAAGAGGGCAAAGCCAAATCTTGAGCTGAAACTGCAGGATTTTGGCCCTGATACCGATGATTGTTTTCTTGGCTTGACTTTAGCTGTAAAGCCCAGTATTTCAAGCTTAGATGTGGTCCAAAGTGTGTCTCAGGGTGTTAGAGAGAACATGCTACTTTGCTCAGATTTTAATGATCATTCAGAGCAGTCAGTATTTTGGACATTATTATCTCCCGATCAAAATGGAGTTCATAACTCTGCAGAGACTTCGTTGTCATTGTCATTCAGTTCAGTTCAACATCCCCCAATTGTTCCACAGTCAGCGGGATTTTCTTTTCAGCCTCTGCAGCCTAACATCTTAACTACACCATTTTTGGCTCTGTCTTCTCCCTTCCAGCGCGGGCACTGTCTTTGA 1317 0.4055 MERYKILRELGDGSCGHVYKARDMRTYEIVAVKRLKRKFCFWEEYTNLREVKALRKMNHPNIIKLKEVVRENNELFFIFEYMDCNLYQLIKERERPFSEEEIRCFMRQVLQGLSHMHKRGFFHRDLKPENLLVTNDVLKIADFGLAREVSSMPPYTQYVSTRWYRAPEVLLRSPCYTPAVDMWAVGAILAELFTLTPLFPGESEIDQLYKIYRILGMPDSTAFTIGADNSQLLDLVARDVESVNVSPVKLSNIIPNASLEAIDLITQLLHWDPSRRPDADQSLQHPFFHVDAWVPCPLSDPLELKLSSKRAKPNLELKLQDFGPDTDDCFLGLTLAVKPSISSLDVVQSVSQGVRENMLLCSDFNDHSEQSVFWTLLSPDQNGVHNSAETSLSLSFSSVQHPPIVPQSAGFSFQPLQPNILTTPFLALSSPFQRGHCL 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02444 438 PANTHER CYCLIN-DEPENDENT KINASE F-4 1 312 - -
Cca01g02444 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Cca01g02444 438 Pfam Protein kinase domain 4 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02444 438 ProSiteProfiles Protein kinase domain profile. 4 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02444 438 CDD STKc_MAK_like 4 288 - -
Cca01g02444 438 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 312 - -
Cca01g02444 438 SUPERFAMILY Protein kinase-like (PK-like) 1 289 IPR011009 -
Cca01g02444 438 SMART serkin_6 4 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02444 438 Gene3D Phosphorylase Kinase; domain 1 1 82 - -
Cca01g02444 438 Gene3D Transferase(Phosphotransferase) domain 1 83 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02444 Cca-Chr1 53603680 53614109 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02444 1 288 Core Cell Cycle Gene Families AT3G48750 37.255 3.15e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Cca01g02444 Pkinase 1.3e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02444 K08829 K08830 gmx:100792842 822.772