Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02439 ATGGGCTGTTTTGATGAGGGGCATTTCAATGGGGAGCTTGAAAATGGAGTGAGTATTGGGTGTGGTGAAGTGGGTTTTGAGGAAGAGATAAAGACTGATATTGCTGCCATTGAGGATGCCGTGAAGGTGCTGTTGCTTGGTCTTGGGGAAAATATTAACAGGGAAGGTCTTAGGAAGACACCACTTCGTGTTGCCAAGGCCCTACGTGAAGGAACCAGAGGATACAGACAAAAAGTGAAGGACATTGTTAATGGTGCCTTATTCCCTGAAGCTGGTCTAGAAAACAATAGAATTGGTCATGCAGGGGGCGCAGGTGGACTTGTGATTGTCCGAGATCTTGATCTTTATTCCTATTGTGAATCTTGCTTGCTACCATTCCAAATAAAATGTCACGTGGGTTATGTCCCTTCTGGCCAAAGAGTTGTGGGTTTAAGCAAGCTCTCTCGCGTGGCCGATGTATTTGCTAAACGACTTCAGGAGCCTCAGCGTCTGGCAGATGAGGTTTGTTCAGCATTGCATCAGGGAATAAAGCCTGCAGGTGTTGCTGTTGTACTTCAGTGTACACATATCCACTTTCCAGAGTCAATCTTTCCTGAAACAAACCACCAAGCATGGGTGAAGACACTTGTTTCATCAGGTTCTGGGATTTTTGAAAACAAAAGTGCAGATGTATGGTCTGATTTCTTTTGCCTTCTTAAATTAGGTATCGAAATAGAAAAAAATCATCCAAGAGGATCATCTGACCAATGCTGGTGTCCATCTTTTTCTGCTAATGTTCCCTCCAAAATTATACCAGtcaatcctgcaatggtcactgcagtatcctcaatccttaattctcTTGGAGAAGATTTATTAAGGAAGGAGCTTGCAGGGACGCCTAGTCGATTTGTGAAATGGCTATTGAACTTCCAAAGTATTGACATGGATGTGAAGCTGAATGGTTCCATCTGTGGTGGGATAGATACTTTGAAACTCAATAGGGAGGTGAACTTCAATGACAAACAAATACACTCTGAGCTGAACTTGCCGTTTTGGTCACAATGTGAGCATCATATACTTCCATTTCATGGTGTTGTCCACGTAGGATACTTCCTTTCAGAAGGATTTAATCCCATTGGTGGACATGTAATAGTAGTTGTAGAGGCAAGCCACACATGTATGATTTCTAGGGGAATTGAGAAGTTTGGAAGTAGTACAGCTACCATTGCTGTATTAGGACGCTTTTCAACCGACCTTGCCGCCAGGGCTGCATTCTTGCAGGGTGTTACAAGTGCTACAATTTCTGGGGAGCAATACAGCCTAGACATTGgatTCCGTTTAGTATGGGTGAAGTACGACTCTTCCCCGGTAGTGGTGGTGTTTTGTTACGATTCTGGCAATAGTTTGTTGAGAAGCATGGGTGAAGTACGAGTGTGGCACGGTGGTCATGTTTTGTTTGTCGCAGGCCGCAACCCTTGTGAAAAGGCATGGGTGAAGTACGAGATGGGGCGGGACCTGGGGCAGGGAAACTTCGCCAGTGTACCACGGGAGAAACCTCGAGACCAACGAGAGCGTGGCCATAAAGGTCATAAAGAAAGAGAAGCTGAAAAAAGAGCGACTGGTGAAGCAGATAAAGCTCGAGGTGTCGGTGATGAGGCTGGTGCGGCACCCCCACATCGTGGAGCTGAAGGAGGTGATGGCCACCAAGGCCAAAATATTCCTGGTGATGGAGTACGTGAAAGGCGGCGAACTCTTCTCCAAGGTGGCGAAGGGAAAGCTCTCGGAAGACCTCGCCAGGAAGTACTTCCAGCAGCTAATAAGCGCCGCGGCGTCACCCACCAGGACCTGAAGCCCGAGAATCTCCTCCTCGACCAGAACGAGGACCTCAAAGTCTCCGACTTCGGACTCTCGGCGCTCCCCGACCAGCGTCGCGCCGACGGCATGCTCCTGACCCCCTGTGGGACCCCCGCTTACGTGGCACCCGAGGATCCTTGGTTTCAAATTGGTTTCATCAGCCCCATTGCGTTTTCCATCAAGGAGGATGTGCTCATCCACAACCTCGATTTCCACGAAAACCACCACCACGAGGCTAAACCTCCCAGGCCCTTTTACAATGCGTTTGAGATTATTTCCTCGCTCTCCCACGGTTTTGATCTCAGGAGCTTGATCGAGACCAGGAAGCGCTCGCCCTCAGTCTTTATATGCAAGTTTTCTACTTCCGCCGTGCTGGGGAAGCTTGAGGCCGTCGCCAACAAGATTAACTTTAGGGTCACCGACAAGAAGGAGTTTGCGCTGACCATGCAGGGGGCGGAGGAGGGCCGCCTATCGCACCTGCTAATCGGAACTCCTACAACAAAAACGCCACAATAA 2352 0.4762 MGCFDEGHFNGELENGVSIGCGEVGFEEEIKTDIAAIEDAVKVLLLGLGENINREGLRKTPLRVAKALREGTRGYRQKVKDIVNGALFPEAGLENNRIGHAGGAGGLVIVRDLDLYSYCESCLLPFQIKCHVGYVPSGQRVVGLSKLSRVADVFAKRLQEPQRLADEVCSALHQGIKPAGVAVVLQCTHIHFPESIFPETNHQAWVKTLVSSGSGIFENKSADVWSDFFCLLKLGIEIEKNHPRGSSDQCWCPSFSANVPSKIIPVNPAMVTAVSSILNSLGEDLLRKELAGTPSRFVKWLLNFQSIDMDVKLNGSICGGIDTLKLNREVNFNDKQIHSELNLPFWSQCEHHILPFHGVVHVGYFLSEGFNPIGGHVIVVVEASHTCMISRGIEKFGSSTATIAVLGRFSTDLAARAAFLQGVTSATISGEQYSLDIGFRLVWVKYDSSPVVVVFCYDSGNSLLRSMGEVRVWHGGHVLFVAGRNPCEKAWVKYEMGRDLGQGNFASVPREKPRDQRERGHKGHKEREAEKRATGEADKARGVGDEAGAAPPHRGAEGGDGHQGQNIPGDGVRERRRTLLQGGEGKALGRPRQEVLPAANKRRGVTHQDLKPENLLLDQNEDLKVSDFGLSALPDQRRADGMLLTPCGTPAYVAPEDPWFQIGFISPIAFSIKEDVLIHNLDFHENHHHEAKPPRPFYNAFEIISSLSHGFDLRSLIETRKRSPSVFICKFSTSAVLGKLEAVANKINFRVTDKKEFALTMQGAEEGRLSHLLIGTPTTKTPQ 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02439 783 Gene3D Transferase(Phosphotransferase) domain 1 598 657 - -
Cca01g02439 783 ProSiteProfiles NAF domain profile. 693 718 IPR018451 GO:0007165
Cca01g02439 783 ProSitePatterns Serine/Threonine protein kinases active-site signature. 605 617 IPR008271 GO:0004672|GO:0006468
Cca01g02439 783 SUPERFAMILY Tetrahydrobiopterin biosynthesis enzymes-like 22 231 - -
Cca01g02439 783 ProSiteProfiles Protein kinase domain profile. 494 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02439 783 Gene3D - 371 425 IPR043133 -
Cca01g02439 783 Gene3D - 328 370 IPR043133 -
Cca01g02439 783 PANTHER GTP CYCLOHYDROLASE I 1 1 374 - -
Cca01g02439 783 PANTHER GTP CYCLOHYDROLASE I 1 373 429 - -
Cca01g02439 783 Pfam NAF domain 697 752 IPR004041 GO:0007165
Cca01g02439 783 MobiDBLite consensus disorder prediction 510 543 - -
Cca01g02439 783 Pfam GTP cyclohydrolase I 376 422 IPR020602 -
Cca01g02439 783 Pfam GTP cyclohydrolase I 37 190 IPR020602 -
Cca01g02439 783 Pfam GTP cyclohydrolase I 272 365 IPR020602 -
Cca01g02439 783 PANTHER GTP CYCLOHYDROLASE I 1 374 IPR001474 GO:0003934|GO:0046654
Cca01g02439 783 PANTHER GTP CYCLOHYDROLASE I 373 429 IPR001474 GO:0003934|GO:0046654
Cca01g02439 783 Pfam Protein kinase domain 603 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02439 783 MobiDBLite consensus disorder prediction 502 605 - -
Cca01g02439 783 SUPERFAMILY Protein kinase-like (PK-like) 602 656 IPR011009 -
Cca01g02439 783 Gene3D - 266 312 IPR043134 -
Cca01g02439 783 Gene3D - 26 82 IPR043134 -
Cca01g02439 783 Gene3D Kinase associated domain 1, KA1 694 780 - -
Cca01g02439 783 SUPERFAMILY Tetrahydrobiopterin biosynthesis enzymes-like 268 423 - -
Cca01g02439 783 Gene3D - 101 235 IPR043133 -
Cca01g02439 783 SMART serkin_6 494 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02439 Cca-Chr1 53507814 53516081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02439 658 772 CBL-interacting serine-threonine protein kinases AT5G10930 36.885 2.07e-17 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Cca01g02439 GTP_cyclohydroI 2.7e-35 CL0334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02439 K01495 - gmx:100780537 720.309