LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca01g02436	ATGATAGCTGGGAAGAGATTTGGAGGAGACACATTTAATGAAGAAGATAATGAAGCATGGAGGCTAAGGAAGGCCATAAAAGATGCTACATATCTATTTGGTGTTTTTGTTGCGGCTGATGCTATTCCATTCCTTAGTTGGTGTGATTTTCAAGGGCACGTGAGTTTCATGAAGAGGACTGCTAAGGACATGGACATTATTCTTGACAAGTGGCTGGAAGAACATGTCAGAAAGAGAGCTGAGGATGAGAATGGCAGTTGTGAAAGCGATTTCATGGATGTGATGATATCAACTTTCCAAGACCAACAAGAAATCTGTGGCTATAAGCGGGAAATAGTTATCAAAGCAACATCCATGTTCCTTATTCTTACTGGGTCAGGAAGCACAGCCATAACACTAACATGGGCACTCTCCTTACTCCTAAACCATGGAAAGGTCCTAAAGAAAGCCCAAGAAGAATTGGATAAGCATGTAGGAAAAGAAAGATGGGTGGAAGAATCAGACATAAAAAAGCTAAGTTATCTTGATGCCATAATCAAAGAGACCCTACGTTTGTACCCACCAGCCCCCTTAACCGGAATTAGGGAAGTGATGGAGGATTGTTGTGTGGCAGGGTACCATGTGTCAAAGGGAACACGTTTGCTTATTAACCTATGGAACTTGCAAAGGGACCCACAAGTATGGCCCAATCCTAATGAATTTGAACCAGAGAGGTTCCTCACCACTCATCAAGACATGGAGTTTATGAGTCAAAACTTTGAGTTAATCCCATTTAGCTTTGGAAGAAGGTCATGCCCTGGAATGACATTTGGGTTGCAAGTGTTGCACTTGACTCTGGCTCGCTTGCTTCAAGGCTTTCACATGTGCACTAAGGATGCTCTTCAGGTTGATATGACTGAAGGCTTAGGACTCGCCTTGCCTAAGGAACATGCCCTTCAACTTATCCTCAAACCACGTCTTCCACTCCACCTCTATGAAACCCTTTAA	987	0.4306	MIAGKRFGGDTFNEEDNEAWRLRKAIKDATYLFGVFVAADAIPFLSWCDFQGHVSFMKRTAKDMDIILDKWLEEHVRKRAEDENGSCESDFMDVMISTFQDQQEICGYKREIVIKATSMFLILTGSGSTAITLTWALSLLLNHGKVLKKAQEELDKHVGKERWVEESDIKKLSYLDAIIKETLRLYPPAPLTGIREVMEDCCVAGYHVSKGTRLLINLWNLQRDPQVWPNPNEFEPERFLTTHQDMEFMSQNFELIPFSFGRRSCPGMTFGLQVLHLTLARLLQGFHMCTKDALQVDMTEGLGLALPKEHALQLILKPRLPLHLYETL	328

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca01g02436	328	Pfam	Cytochrome P450	11	309	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca01g02436	328	PANTHER	CYTOCHROME P450 82G1	1	326	-	-
	Cca01g02436	328	Gene3D	Cytochrome P450	1	321	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca01g02436	328	SUPERFAMILY	Cytochrome P450	7	319	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca01g02436	328	PANTHER	CYTOCHROME P450 82C3-RELATED	1	326	-	-
	Cca01g02436	328	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	258	267	IPR017972	GO:0005506\|GO:0016705
	Cca01g02436	328	PRINTS	P450 superfamily signature	265	276	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca01g02436	328	PRINTS	P450 superfamily signature	256	265	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca01g02436	328	PRINTS	P450 superfamily signature	124	141	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Cca01g02436	328	PRINTS	P450 superfamily signature	177	188	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca01g02436	Cca-Chr1	53466515	53472104	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca01g02436	1	325	Cytochrome P450	AT4G31970	50.303	2.07e-111	332

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca01g02436	K17961		-	gmx:100787489	571.622

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