Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02428 ATGGCGAGATTAGAAGTCAATCATTTTTTTCTTATTTTGCTCTCTTTGGCCGTCATTATTCCTACCCTGAATGCCAATATCTTGGAGAAAGATGAGTATTGGCAGAACCATGTCAATGACTTCGATCCTTATTGGCAGGAAAGGGCAAAAACTGCTAAAAAAAACAGCGAGGCTGCTTATTTTCAAGACCCCTATTCACTCTCCGGCAACCTCACTACCTCTGTTAGCGACCTTATAGTTGGAAAGAATAATGCAAGAAGGAACCTGAAGGGGAGAAACAAGGGAGCAGAATGCTTGGCCACCAACCCCATTGACAGGTGCTGGAGGTGTGACCCTAACTGGGCCAACAACAGGCAGAAGCTTGCAGATTGCGTGCAGGGATTCGGCAGAAACACGGTCGGAGGCAAAGGTGGTCCCATCTACGTTGTCACAGACCCCTCAGACGATGAATTGGTTAACCTAAAACCTGGGACTCTTCGTCACGCGGTCACACGCGATGGTCCACTCTGGATCATCTTTGCACGCAGCATGCTCATCACCCTCCAGCAGGAGCTCATCATGAACAGCAACAAGACCATCGACGGAAGAGGAGTTGAGGTTTACATTGCCAACGGCGCTGGCCTCACTGTTCAGTTTGTCAGTAACATCATCATCCACGGGATCAAGATCTACGACATCAAGGTCGGTCAGGGTGGCATTATCAGAGACTCCGAGACCCATTTTGGGCAAAGGACTATGAGTGACGGCGATGGAATTTCCGTCTTCGGTGCTAGCAACATTTGGATCGATCACGTTTCCATGAGAAACTGCTCCGATGGACTCATTGATGTCATCATGGCCTCCACTGCTATCACCATTTCCAACGGCCATTTCACTGACCACAACGAGGCGTTCCTGTTCGGTGCTCGTGACGAATGCGAATCTGATAAAGTCATGCAAGTGACACTGGCATTCAACCACTTTGGGAAGAGATTAGTTCAAAGGATGCCCAGAGTGAGATATGGTTTTGTGCATTCGGTTAATAACGACTACACTCACTGGGAAATGTATGCCATTGGTGGCAGCCAGAACCCCACCATCATCAGCGAGGGTAACCGATTTATAGGTCCTAACATCAGGTTTGCAAAAGAGATTACAAAGAGAGAATACACAGATGAGAGCATTTGGAAGAATTGGCAGTGGAGATCAATCAACGATGTATACATGAATGGAGCATTTTTTGTGGAATCAGGGCCTGAGCTCGTAAACAGACCCTTCTCAAGGCAAGACATGATCACAGCTAAGCCAGGGAGTTACGTGGGAAGGCTGACACGCTATGCTGGAAGCCTTAGGTGCAGAGTGGGTCTACCTTGTTAA 1356 0.4794 MARLEVNHFFLILLSLAVIIPTLNANILEKDEYWQNHVNDFDPYWQERAKTAKKNSEAAYFQDPYSLSGNLTTSVSDLIVGKNNARRNLKGRNKGAECLATNPIDRCWRCDPNWANNRQKLADCVQGFGRNTVGGKGGPIYVVTDPSDDELVNLKPGTLRHAVTRDGPLWIIFARSMLITLQQELIMNSNKTIDGRGVEVYIANGAGLTVQFVSNIIIHGIKIYDIKVGQGGIIRDSETHFGQRTMSDGDGISVFGASNIWIDHVSMRNCSDGLIDVIMASTAITISNGHFTDHNEAFLFGARDECESDKVMQVTLAFNHFGKRLVQRMPRVRYGFVHSVNNDYTHWEMYAIGGSQNPTIISEGNRFIGPNIRFAKEITKREYTDESIWKNWQWRSINDVYMNGAFFVESGPELVNRPFSRQDMITAKPGSYVGRLTRYAGSLRCRVGLPC 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02428 451 Pfam Pectate lyase, N terminus 37 89 IPR007524 GO:0030570
Cca01g02428 451 SUPERFAMILY Pectin lyase-like 102 442 IPR011050 -
Cca01g02428 451 PRINTS Pollen allergen Amb family signature 124 141 IPR018082 -
Cca01g02428 451 PRINTS Pollen allergen Amb family signature 148 173 IPR018082 -
Cca01g02428 451 PRINTS Pollen allergen Amb family signature 184 200 IPR018082 -
Cca01g02428 451 PRINTS Pollen allergen Amb family signature 248 269 IPR018082 -
Cca01g02428 451 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Cca01g02428 451 PRINTS Pollen allergen Amb family signature 350 369 IPR018082 -
Cca01g02428 451 PRINTS Pollen allergen Amb family signature 392 416 IPR018082 -
Cca01g02428 451 PRINTS Pollen allergen Amb family signature 422 445 IPR018082 -
Cca01g02428 451 PANTHER PECTATE LYASE 18-RELATED 7 451 IPR045032 GO:0030570
Cca01g02428 451 Pfam Pectate lyase 184 367 IPR002022 -
Cca01g02428 451 SMART amb_all 176 373 IPR002022 -
Cca01g02428 451 Gene3D - 101 444 IPR012334 -
Cca01g02428 451 PANTHER PECTATE LYASE 7 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02428 Cca-Chr1 53335443 53337517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02428 2 451 Polysaccharide Lyase AT1G14420 56.317 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02428 K01728 - gmx:100798579 759.985