Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02423 ATGGGGTTGGGTGCTGAAAATGGTAAGGTGATGGTGGAGTCTTTGGATGTGTGTAAATCAAAAGGgaggaagaagaagaagaaagaggatggggatatcgaagaggaagaagaaACTGGGTGTTGGTTTAGGCTGAGGTTCATCGGGAGCTGCATTTCTTCAAGATCCAAGGTTGATAGCTCAGTTAGTGGCACCAGCACTAATTATGCTGAAAGTAAATCAACTAATGATACAAGTCGAGATCAACCAACTGTCCCTGTAGTCTCTTCAACAACCACTAGTAATGCGGAAAGCAATTCATCTACTTCCAAACTTGAAGAGGAGCTTAAAGTTGCTTCCAGGCTGCGAAAATTCACTTTCAATGATCTTAAGTTGGCAACAAGAAATTTTCGGCCTGAAAGTCTTCTTGGTGAAGGTGGCTTTGGTTGTGTATTCAAGGGATGGATTGAAGAAAATGGAACTGCTCCAGTGAAACCTGGCACAGGGCTTACTGTTGCTGTAAAAACCCTCAACCATGATGGGCTCCAGGGTCATAAAGAATGGCTGGCTGAGGTAAATTATCTTGGTGATCTAGTTCATCCAAACCTGGTTAAACTGATAGGTTACTGCATTGAAGATGATCAAAGGTTGCTAGTATACGAGTTTATGCCTCGGGGAAGCCTGGAAAATCACTTGTTTAGGAGGTCCCTACCTCTTCCGTGGTCTATTAGGATGAAAATTGCACTAGGAGCTGCAAAGGGTCTTGCTTTTCTTCATGAGGAAGCTGAACGACCAGTGATATATAGGGATTTCAAAACTTCCAATATACTATTGGATGCAGACTACAATGCTAAGCTCTCAGATTTTGGACTTGCAAAAGATGGTCCAGAGGGTGATAAAACCCATGTGTCTACTCGAGTGATGGGAACCTATGGTTATGCAGCCCCAGAATATGTCATGACAGGACATCTTACATCAAGAAGTGATGTGTATAGTTTTGGAGTAGTACTCCTTGAGATGCTGACTGGCAGAAGATCTATGGACAAAAATCGGCCCAATGGTGAACACAACCTTGTGGAATGGGCTAGACCACATCTAGGAGAGAGAAGAAGGTTTTACAGGTTGATAGATCCTCGGTTGGAAGGTCACTTCTCGATAAAAGGAGCTCAGAAAGCCGCTCATCTGGCTGCTCACTGCCTTAGCAGAGATCCGAAAGCACGCCCCTTGATGAGTGAAGTTGTGGAAGCCTTAAAGCCTCTGCCAAACCTCAAGGACATGGCTAGTTCATCATATTATTTCCAGACAATGCAAGCTGACCGCTTTAGTGCAAGTCCAAACACTAGAAATGGGAGAACACAAGGAGCATTGCTCACCAGAAATGGGCAACAGCAAAGGAGCCTATCAATACCACATGGTACTCATGCATCTCCATATCACCACCAGTTTCCCCAACCATCACCAAAACCCAATGGCAAGGCATAG 1461 0.4292 MGLGAENGKVMVESLDVCKSKGRKKKKKEDGDIEEEEETGCWFRLRFIGSCISSRSKVDSSVSGTSTNYAESKSTNDTSRDQPTVPVVSSTTTSNAESNSSTSKLEEELKVASRLRKFTFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNYLGDLVHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSIKGAQKAAHLAAHCLSRDPKARPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRFSASPNTRNGRTQGALLTRNGQQQRSLSIPHGTHASPYHHQFPQPSPKPNGKA 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02423 486 Gene3D Transferase(Phosphotransferase) domain 1 216 432 - -
Cca01g02423 486 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 61 476 - -
Cca01g02423 486 MobiDBLite consensus disorder prediction 14 37 - -
Cca01g02423 486 CDD STKc_IRAK 136 413 - -
Cca01g02423 486 MobiDBLite consensus disorder prediction 56 102 - -
Cca01g02423 486 MobiDBLite consensus disorder prediction 452 486 - -
Cca01g02423 486 Pfam Protein tyrosine and serine/threonine kinase 134 410 IPR001245 GO:0004672|GO:0006468
Cca01g02423 486 SUPERFAMILY Protein kinase-like (PK-like) 116 433 IPR011009 -
Cca01g02423 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Cca01g02423 486 PANTHER OS01G0588500 PROTEIN-RELATED 61 476 - -
Cca01g02423 486 ProSitePatterns Protein kinases ATP-binding region signature. 136 168 IPR017441 GO:0005524
Cca01g02423 486 MobiDBLite consensus disorder prediction 16 37 - -
Cca01g02423 486 Gene3D Phosphorylase Kinase; domain 1 89 215 - -
Cca01g02423 486 MobiDBLite consensus disorder prediction 56 106 - -
Cca01g02423 486 ProSiteProfiles Protein kinase domain profile. 130 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02423 Cca-Chr1 53287487 53291901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02423 77 410 Glycoside Hydrolase AT3G07070 53.550 6.28e-117 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca01g02423 PK_Tyr_Ser-Thr 9.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02423 - - gmx:100807510 900.197