Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02417 ATGATGGCAGGTGAGAAGTTTCATGGGGGTTCAAGCATGACACTGAAACTCCAAAAAGAAAGGCTTTCATGCTCCTCTGAGATGATTCAGTCATTTTGGGTTCAAAATCAAAACTCTGAACCTTCTTTTCATGGTTCAAAACCCATGGCTAATGTTGTGAATGTCATGGATTGGCCCTTCTTCCGAGGGCTTGAGAAAGAAGAGAACGGTGATGATGAGGATTTTGATGCGTGCTTCCATCAACCCGGAAAGAAAAGGAGGCTCACAAGCGAACAAGTTCAGTTCCTTGAAAGCAACTTCGAGGCAGAAAACAAGCTTGAACCCGAAAGGAAGGTCCAACTTGCAAAGGAGCTTGGCATGCAGCCAAGGCAAGTGGCCATATGGTTCCAAAACCGTAGGGCTAGGTTCAAAACCAAACAGATAGAAAAAGACTATGGCACGTTGAAAGCTAGCTATGACATGCTTAAAAGGGACTACGACAATCTCCTTCAAGAGAATGACAAGTTAAAGGAAGAGGTGAATTCTCTCAAGAGCAGATTGATTCCCGGAGAGAAAGAGGAACAGAATTTGGATGATACCTGCTGTGATGCTGTCAACTCACAGCATAAAGAGGAGATGAATTTAATAGTGAACACAGGTTCTGAAAATGGATCCAAAGTGACACTTCCTGTTATGGCAATAAGCAAACAGGAAGATGCTAATTCAGCTAAGAGTGATGTGCTTGATTCGGATAGTCCACATTTCACTGATGGAAACCAATCCTCATTCGTGGAGCCTGCAGATTCCTCCCAAGATGAGGAAGACATTCTGAGCCAAAACATCTTGACCATGCCATTCTTACCTAAGGTTGAAGATGTCTGCTATGATGAACCCCGCGATAATTCTTGCAGTTTTAGGTTCCCAGCTGAAGATCAAACCTTCTGTTTTTGGTCTTTTTGA 939 0.4324 MMAGEKFHGGSSMTLKLQKERLSCSSEMIQSFWVQNQNSEPSFHGSKPMANVVNVMDWPFFRGLEKEENGDDEDFDACFHQPGKKRRLTSEQVQFLESNFEAENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQIEKDYGTLKASYDMLKRDYDNLLQENDKLKEEVNSLKSRLIPGEKEEQNLDDTCCDAVNSQHKEEMNLIVNTGSENGSKVTLPVMAISKQEDANSAKSDVLDSDSPHFTDGNQSSFVEPADSSQDEEDILSQNILTMPFLPKVEDVCYDEPRDNSCSFRFPAEDQTFCFWSF 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02417 312 Pfam Homeobox associated leucine zipper 139 180 IPR003106 GO:0006355|GO:0043565
Cca01g02417 312 Pfam Homeodomain 84 137 IPR001356 GO:0003677
Cca01g02417 312 Gene3D - 77 144 - -
Cca01g02417 312 MobiDBLite consensus disorder prediction 233 266 - -
Cca01g02417 312 SUPERFAMILY Homeodomain-like 73 141 IPR009057 -
Cca01g02417 312 CDD homeodomain 82 140 IPR001356 GO:0003677
Cca01g02417 312 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 2 312 - -
Cca01g02417 312 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981|GO:0006355
Cca01g02417 312 PRINTS Lambda-repressor HTH signature 110 119 IPR000047 GO:0003677
Cca01g02417 312 PRINTS Lambda-repressor HTH signature 119 135 IPR000047 GO:0003677
Cca01g02417 312 SMART HOX_1 81 143 IPR001356 GO:0003677
Cca01g02417 312 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 2 312 IPR045224 GO:0003700
Cca01g02417 312 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677
Cca01g02417 312 Coils Coil 152 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02417 Cca-Chr1 53129024 53131418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02417 82 256 Homeobox Transcription Factor Family AT3G01470 44.865 1.17e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca01g02417 Homeodomain 4.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02417 - K09338 gmx:100804328 492.271