Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02410 ATGGGTGCAGGGGACTACTACAAGATCCTCAAGGTGAACCGAAATGCTACCGATGAGGAACTGAAGAGGGCGTATAAGAGGTTGGCCATGAAGTGGCACCCAGATAAAAGTCACCAACAGCACCAAATTACCAAAGAAGAAGCTGAAGCAAAGTTCAAGCAGGTTTCTGAGGCTTATGATGTTCTCAGCGACCCCAAGAAGCGCCAGATCTATGATTTCTATGGCCACTATCCCCTCAATTCTACGAAGGTGACTGAGAAAAGTGATGTGGGTGTTAGGGTCCCCAAGGATGAGAAAGTTGGGGTGGTTGAGACCAAGTTGGTGTGTACCCTTGAGGAGCTTTACAGAGGTTGCAAAAGGAAGTTGAGGATCTCAAGGACTGTTCCTCATGAATTTGGCAAGTTGAAGACTGTGGAAGAGGTCTTGAAAATAGACATCAAACCTGGTTGGAAGAAAGGCACAAAAATAACATTTCCAGGGAAAGGAAACCAACAAGCAGAAAACACTGCTCCTGATGATTTAATCTTTGTGGTGGATGAGAAACCACATGCATTTTTCAAAAGAGATGGAAATGATTTGGTAGTCACACAGAAAATCCTACTTCTAGAGGCTCTAGTGGGAAAGACACTGAACATGACAACCTTGGATGGAAGAGAACTCACAATTGAAGTAACAAAAGTTGTGAAACATGGTTATGTGTTGGTGGTCCCAAATGAAGGAATGCCAATTTCAAAGGAACCTGGAAAGAAAGGAAACTTGAGAATCAAGTTTGATGTTATGTTCCCATCAAGGCTTACCGCTCAACAGAAGCATGAGCTGAAAAGGATTTTGTGCAACACTCATGACTAA 849 0.4323 MGAGDYYKILKVNRNATDEELKRAYKRLAMKWHPDKSHQQHQITKEEAEAKFKQVSEAYDVLSDPKKRQIYDFYGHYPLNSTKVTEKSDVGVRVPKDEKVGVVETKLVCTLEELYRGCKRKLRISRTVPHEFGKLKTVEEVLKIDIKPGWKKGTKITFPGKGNQQAENTAPDDLIFVVDEKPHAFFKRDGNDLVVTQKILLLEALVGKTLNMTTLDGRELTIEVTKVVKHGYVLVVPNEGMPISKEPGKKGNLRIKFDVMFPSRLTAQQKHELKRILCNTHD 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02410 282 Gene3D - 101 181 - -
Cca01g02410 282 Gene3D - 183 263 - -
Cca01g02410 282 Gene3D DnaJ domain 2 95 IPR036869 -
Cca01g02410 282 PRINTS DnaJ domain signature 7 25 IPR001623 -
Cca01g02410 282 PRINTS DnaJ domain signature 25 40 IPR001623 -
Cca01g02410 282 PRINTS DnaJ domain signature 47 67 IPR001623 -
Cca01g02410 282 PRINTS DnaJ domain signature 67 86 IPR001623 -
Cca01g02410 282 CDD DnaJ 5 64 IPR001623 -
Cca01g02410 282 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 279 - -
Cca01g02410 282 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Cca01g02410 282 CDD DnaJ_C 103 265 - -
Cca01g02410 282 SMART dnaj_3 4 67 IPR001623 -
Cca01g02410 282 Pfam DnaJ domain 5 72 IPR001623 -
Cca01g02410 282 ProSiteProfiles dnaJ domain profile. 5 75 IPR001623 -
Cca01g02410 282 Pfam DnaJ C terminal domain 103 262 IPR002939 -
Cca01g02410 282 Coils Coil 38 58 - -
Cca01g02410 282 SUPERFAMILY HSP40/DnaJ peptide-binding domain 185 272 IPR008971 GO:0006457|GO:0051082
Cca01g02410 282 SUPERFAMILY Chaperone J-domain 4 80 IPR036869 -
Cca01g02410 282 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 279 - -
Cca01g02410 282 SUPERFAMILY HSP40/DnaJ peptide-binding domain 104 183 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02410 Cca-Chr1 53017009 53019443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02410 6 74 C2H2 Transcription Factor Family AT1G74250 37.681 1.60e-11 62.8