Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02404 ATGGCGAAGAGTGAGGTGAAACTCATCGGCAAATATTCCAGTCCTTATGCGATGAGGGTGAAGATTGCCCTCAACATCAAATCCCTTGAATATGAACACTTTGAAGAAACCTTGAACCCAAAAAGCGATTTTCTTCTTCAGTCAAACCCTGTGTATGGCAAAGTCCCAGTTCTCATCCATCACGATAAACCCATCTGCGAGTCTTTGGTCATAATTGAATACATAGATGAAACATGGTCCTCTGCTCCTTCCATCCTTCCCTCTGATCCTTATGATAGAGCTCTTGCTCGATTTTGGGCTTCTTACATAGACGATAAGTGGTTTCCTTCCATGAAAAGCATTATAATTGTTGAAGGAGAGGAGGAAAGGAAGCCATACTTTGAGGTGTTGGAAGAAGTGCTTGAGAGGATGGAGGATGCTTTTGAGAAATGCAGCAAAGGGAAGCCCTTTTTTGGTGGAGACATGATTGGATTCCTTGATATTGCTTTTGGATGCTTCCTGGGATGGCTCAGTGTCATAGAACATAGGTATGAGAGGAAACTTTTGGTAGAAGCAAAGGCTCCTGCTTTGGTTAAATGGGCTGAGAGATTTGCTGCTGATCCTTCTGTTAAGGGTCTTATACCTGAGACTGATAAGCTTGTTGAGATTTCCAAGTCTCTTCAGATCAAATGGAGAGCTGCTATTGGCAAGAAATAA 696 0.4253 MAKSEVKLIGKYSSPYAMRVKIALNIKSLEYEHFEETLNPKSDFLLQSNPVYGKVPVLIHHDKPICESLVIIEYIDETWSSAPSILPSDPYDRALARFWASYIDDKWFPSMKSIIIVEGEEERKPYFEVLEEVLERMEDAFEKCSKGKPFFGGDMIGFLDIAFGCFLGWLSVIEHRYERKLLVEAKAPALVKWAERFAADPSVKGLIPETDKLVEISKSLQIKWRAAIGKK 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02404 231 CDD GST_C_Tau 90 218 IPR045074 GO:0004364|GO:0006749
Cca01g02404 231 Pfam Glutathione S-transferase, C-terminal domain 98 201 IPR004046 -
Cca01g02404 231 SFLD Glutathione Transferase (cytosolic) 2 225 IPR040079 -
Cca01g02404 231 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 218 IPR045073 -
Cca01g02404 231 SUPERFAMILY Thioredoxin-like 6 108 IPR036249 -
Cca01g02404 231 Pfam Glutathione S-transferase, N-terminal domain 6 77 IPR004045 -
Cca01g02404 231 Gene3D Glutaredoxin 1 85 - -
Cca01g02404 231 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 220 IPR010987 -
Cca01g02404 231 CDD GST_N_Tau 6 79 - -
Cca01g02404 231 Gene3D - 86 228 - -
Cca01g02404 231 PANTHER GLUTATHIONE S-TRANSFERASE U17 4 218 - -
Cca01g02404 231 SUPERFAMILY GST C-terminal domain-like 85 218 IPR036282 -
Cca01g02404 231 SFLD Main.3: Omega- and Tau-like 2 225 IPR045073 -
Cca01g02404 231 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 83 IPR004045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02404 Cca-Chr1 52950765 52952353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02404 1 220 Glutathione S-transferase Gene Family AT1G10370 58.824 4.33e-92 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02404 K00799 - cam:101508281 385.956