Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02400 ATGTCTTCCGCGGAGGACAAGGATCACGGGATCATGCTCTTCGGCGTGCGCCTCACCCTACCCGATAATAATAACCCCACTTCCTTCCGAAAGACCGCCAGCATGACCGATCTCTCCCACTACCACCCCGCGCCGCACCATCCCAACACAGGCTACGCCTCAGACCACGTCGTTCATCCCTCCCATCGCACGCGCCACCGCAAGCGTGGTGTCCCCTGGACCGAGCAAGAGCATAGGCTATTCCTGTTGGGATTACAGAACGTTGGAAAAGGAGATTGGAGAGGGATTTCTAGAAACTTCGTCAAGACTCGAACGCCCACTCAGGTCGCCAGTCACGCTCAGAAGTATTTCCTCCGCCGTCACACCCACAACCGCCGCCGCCGGAGATCTAGTCTCTTCGACATCACCACCCACACGGTGATGGAATCGTGGATGGTAAAGGGAGAGGAACAAGCGGTTGCATCAGGTAGGTCGAAACCGGTTCTGCCGGTTCCTCCGTCTTCGAAGATGGATGAGTTGGACTTGAATGGGAAGTCACTGTCGCTGAAGCTGCCGGGGACTTTTCAGGCTATGAGTGTTGAGAATTTTGGCGGTGGCGGGGATAGCATTATCAGCGTTGCTTGA 624 0.5609 MSSAEDKDHGIMLFGVRLTLPDNNNPTSFRKTASMTDLSHYHPAPHHPNTGYASDHVVHPSHRTRHRKRGVPWTEQEHRLFLLGLQNVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHTHNRRRRRSSLFDITTHTVMESWMVKGEEQAVASGRSKPVLPVPPSSKMDELDLNGKSLSLKLPGTFQAMSVENFGGGGDSIISVA 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02400 207 CDD SANT 72 117 IPR001005 -
Cca01g02400 207 Pfam Myb-like DNA-binding domain 72 117 IPR001005 -
Cca01g02400 207 PANTHER TRANSCRIPTION FACTOR KUA1 10 151 - -
Cca01g02400 207 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 68 119 IPR006447 GO:0003677
Cca01g02400 207 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 121 IPR017930 -
Cca01g02400 207 SUPERFAMILY Homeodomain-like 66 120 IPR009057 -
Cca01g02400 207 ProSiteProfiles SANT domain profile. 68 121 IPR017884 -
Cca01g02400 207 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 10 151 - -
Cca01g02400 207 ProSiteProfiles Myb-like domain profile. 65 117 IPR001005 -
Cca01g02400 207 Gene3D - 71 122 - -
Cca01g02400 207 SMART sant 69 119 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02400 Cca-Chr1 52849994 52850770 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca01g02400 Myb_DNA-binding 6.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02400 - - gmx:100775434 276.944