Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02399 ATGCCGTCTCACGCGGATCTGGAGCGTCAGATCGAGCAGTTGATGGAGTGCAAGGCTCTGGCGGAGTCGGAGGTGAAGGCGCTGTGCGATCAAGCTAGGGCTATTCTGGTGGAAGAGTGGAACGTGCAACCGGTGAAGTGCCCCGTCACCGTCTGCGGCGATATTCACGGCCAGTTCTACGATCTCATCGAGTTGTTTCGGATTGGAGGCAGCGCCCCTGACACCAACTACCTCTTCATGGGTGATTATGTAGATCGTGGATACTATTCAGTGGAGACTGTTTCACTTCTGGTGGCATTGAAAGTCCGTTATCGAGATAGAATCACGATTCTCAGGGGAAATCATGAAAGCCGTCAAATTACTCAAGTGTATGGCTTCTATGATGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAATATTTTACGGATTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGATTTTCTGCTTGCATGGAGGTCTCTCACCTTCTTTGGATACACTGGATAATATCAGAGCATTAGATCGTATACAAGAGGTTCCACATGAAGGGCCAATGTGTGATCTCTTGTGGTCTGACCCTGATGATCGCTGTGGATGGGGAATATCTCCACGTGGTGCTGGATACACATTTGGACAAGACATAGCTGCACAGTTCAATCATACCAATGGTCTCTCCCTGATATCCAGAGCTCATCAGCTTGTTATGGAAGGATACAATTGGTGCCAGGAAAAGAATGTGGTGACCGTATTTAGTGCTCCAAATTATTGTTACCGATGTGGGAATATGGCTGCCATACTAGAAATAGGAGAGAATATGGATCAGAATTTTCTTCAGTTTGATCCAGCTCCAAGGCAAATTGAGCCTGACACCACACGCAAGACTCCAGATTATTTTTTGGTGGTCATCAACATAATTCTTTCTTTCGGAGTTTACCTGCAGCCGCTACCGCCGCCTTATTTGTACAAGAAACCAATAGAACTGATACAAACCACCAATTGGGGTTGTATATTTTTGGGAGGAGGAAACGGCAATAACATGGTAACTACAAACATGAATGCAAAATTGCAAGCTATTCTCCATGGTCTCCGTTTAGCTTGGAGTAAGGGATACGTGTTTCCCTACTTTTCTGAATCCTCCGTAATGGCCAACAAGGACTATGGAAACAACAAGAGATCAGTTTGTGAGACATCAATGTTGTTGGTGGCAAACATCATCAGATTATCATCTCTAAGATTTTCTGGCCACAGTTTCACAAAAAAACTTACACCTCCTCATCAAGAGGAACCAATCCATGTACCTACGGTGGGCAAAGGCAACGAATCTTCGGTTTCTAAATTTTACATTAGTGGAAGAACACATGAACCGGAGAGGATCAACATGCCTCGTTCCTACCTAACGAAACCACCAAAGGAGGATCCAACAACCTATGTGCATCAAGCACAAGACGATGTTGACGTCAACGCTGAGAACTATATCAGCCATATTCGTGGAAAGATAAGGAATGATGCTAATGTTCATCATTGA 1545 0.444 MPSHADLERQIEQLMECKALAESEVKALCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGSAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIAAQFNHTNGLSLISRAHQLVMEGYNWCQEKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFLVVINIILSFGVYLQPLPPPYLYKKPIELIQTTNWGCIFLGGGNGNNMVTTNMNAKLQAILHGLRLAWSKGYVFPYFSESSVMANKDYGNNKRSVCETSMLLVANIIRLSSLRFSGHSFTKKLTPPHQEEPIHVPTVGKGNESSVSKFYISGRTHEPERINMPRSYLTKPPKEDPTTYVHQAQDDVDVNAENYISHIRGKIRNDANVHH 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02399 514 PRINTS Serine/threonine phosphatase family signature 48 75 IPR006186 GO:0016787
Cca01g02399 514 PRINTS Serine/threonine phosphatase family signature 110 134 IPR006186 GO:0016787
Cca01g02399 514 PRINTS Serine/threonine phosphatase family signature 145 171 IPR006186 GO:0016787
Cca01g02399 514 PRINTS Serine/threonine phosphatase family signature 174 201 IPR006186 GO:0016787
Cca01g02399 514 PRINTS Serine/threonine phosphatase family signature 230 250 IPR006186 GO:0016787
Cca01g02399 514 PRINTS Serine/threonine phosphatase family signature 252 268 IPR006186 GO:0016787
Cca01g02399 514 PRINTS Serine/threonine phosphatase family signature 77 104 IPR006186 GO:0016787
Cca01g02399 514 SUPERFAMILY Metallo-dependent phosphatases 6 310 IPR029052 -
Cca01g02399 514 ProSitePatterns Serine/threonine specific protein phosphatases signature. 111 116 IPR006186 GO:0016787
Cca01g02399 514 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 1 306 - -
Cca01g02399 514 SMART pp2a_7 20 290 IPR006186 GO:0016787
Cca01g02399 514 CDD MPP_PP2A_PP4_PP6 6 290 - -
Cca01g02399 514 Gene3D - 2 306 IPR029052 -
Cca01g02399 514 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 306 - -
Cca01g02399 514 Pfam Calcineurin-like phosphoesterase 48 239 IPR004843 GO:0016787
Cca01g02399 514 Coils Coil 4 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02399 Cca-Chr1 52840028 52848656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02399 49 225 Calmodulin-binding Proteins AT5G63870 36.449 1.36e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02399 K04382 - gmx:100783950 635.565