Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02397 ATGGCTGTTTTGGAGGGTCGCACGGGAACTAGATCTATTCAAGGAATTGTGCTTGATTTTGAGGAAGAAAGATTTTATAAAAGCAAGGCGGGATCAGTTTTTACGGAGAACCTTCAATCGAAATCAAGTTTAAGAAATGTATCAGCATTCATCGAACAGTACCTTCTGAATTGTCTCCTACCTCAATCTGATCAAAACAAAGAGGTTGTACTTCATACGAAATCCTTTGAACCAATGGTTAACCTGAGACAGCTTCAGATCAATAATCTGAAATTAGAAGGAAAGTTTCTTCCAGCTGAACTGAAATGGCTACAATGGCAAGGGTGTCCTTTAGAACGCATGCCTTTGGAATTTTGGCCACGAGAGCTGACTGTCCTTGATCTCAGAAACAGCAAGAAAATAGAAACCTTGTGGGCATGGAATGGTTCCAAGGTGCCACAGAACTTAATGGTTTTGAACCTTTCCTACTGCACCCAACTCACTTCTATCCCTGATTTATCTGGGTGTCAACATCTAGAGAAGATTGATCTGGAGAACTGCATTAATCTAACTAAGATTCATGAATCAATTGGCAGTTTGAGAACCTTGCGTAGTTTAAATTTGACTCGTTGTTCAAACCTTTTCGACCTTCCGATTGATGTCTCAGGGCTTAAAGATCTAGAGAGCCTTTTTCTCTCTGGCTGCTCCAAGTTGAAAACATTACCAGAAAACATAGGCATCCTGAAATCCTTGAAAGCACTTCATGCTGATAACACAGCTATAGCAGAGTTGCCTCAATCCATTTTTCGCCTCACCAAACTTGAACAGCTTGTTTTAGAAGGTTGCCAACATTTGAGAAGGCTACCTAGTTCTATAGGACATCTGTGTTCTTTGCAAGAATTATCTCTATATGGGTCTGGATTAGAAGAATTACCCGACTCTGTTGGAACATTGAATAACCTTGAGAAACTCAATTTGATGTGGTGTAAATCTCTCACTGTAATTCCTGATTCTATAGGCAATCTCATATCACTGACAAAACTTTGGTTTGATAGAACTGCAATTAAAGAATTTCCTTCTGCCATTGGTTCTTTATCTTACCTGAGAGAGTTATCATTTGGAAATTGTAAATCTCTCACTTCGTTGCCACATTCAATTAAAACTTTGGCTTCACTAGTTGATCTTCAGTTAGATGGAACAGCCATCACAAATTTGCCAGATGAGATTGGAGAGATGAAACTGCTGAGGAAACTTCAGTTGCAGAATTGTAAAGATCTTGAATATTTACCAGAATCTATTGGTCACCTAGCATCTCTTACTACACTGAACATGGTCAATGGAAATATCAGGGAATTGCCAGAGTCCGTTGGATTGCTAGAAAATCTTGTAACCTTAAGATTGAACAAATGTAGAATGCTCAGAAAGCTTCCACCTTCTATCGGAAATTTGAAATCTCTATATCACTTTTTCATGGAGGAAACGGCTGTGTCAAACTTACCTGAAAGCTTCGGTATGCTCTCAAGCTTGAGAACATTGAGAATGGCAAAGAAGCCTGATTTAAATTCCAATGAAAATAGCTTCCTTGCAGAACCTGAAGGGAACCCCAGCCCTTTTGTACTAACATCTTCCTTCTGCAATCTGACCTTGCTAACTGAGCTTGATGCACGAGCCTGGAGAATATCTGGGAAAATTCCAGATGAATTTGAGAATTTATCTCTATTAGAGACTTTAAAGTTGGGCCTGAATGATTTTCACAGCCTTCCTTCCAGCTTGAAGGGACTTTCTATTCTCAAGGTGCTTTCACTGCCAAACTGCACTCAGCTGATCTCTCTCCCCTCACTTCCTTCAAGCTTGATTGAGCTGAATGTTGAAAACTGTTCTGCATTAGAAACTATCCATGACATGTCAAATTTAGAGAGCCTGCAGGAGTTGAAACTCACAAACTGTGTAAAAGTGGTGGATATTCCTGGTCTTGAAGGTTTGAAGTCCTTGAGAAGGTTGTACCTTGGTGGCTGCGTTGCATGCTCCTCACAAATACGCAAGAGACTTTCAAAGGTT 2037 0.3996 MAVLEGRTGTRSIQGIVLDFEEERFYKSKAGSVFTENLQSKSSLRNVSAFIEQYLLNCLLPQSDQNKEVVLHTKSFEPMVNLRQLQINNLKLEGKFLPAELKWLQWQGCPLERMPLEFWPRELTVLDLRNSKKIETLWAWNGSKVPQNLMVLNLSYCTQLTSIPDLSGCQHLEKIDLENCINLTKIHESIGSLRTLRSLNLTRCSNLFDLPIDVSGLKDLESLFLSGCSKLKTLPENIGILKSLKALHADNTAIAELPQSIFRLTKLEQLVLEGCQHLRRLPSSIGHLCSLQELSLYGSGLEELPDSVGTLNNLEKLNLMWCKSLTVIPDSIGNLISLTKLWFDRTAIKEFPSAIGSLSYLRELSFGNCKSLTSLPHSIKTLASLVDLQLDGTAITNLPDEIGEMKLLRKLQLQNCKDLEYLPESIGHLASLTTLNMVNGNIRELPESVGLLENLVTLRLNKCRMLRKLPPSIGNLKSLYHFFMEETAVSNLPESFGMLSSLRTLRMAKKPDLNSNENSFLAEPEGNPSPFVLTSSFCNLTLLTELDARAWRISGKIPDEFENLSLLETLKLGLNDFHSLPSSLKGLSILKVLSLPNCTQLISLPSLPSSLIELNVENCSALETIHDMSNLESLQELKLTNCVKVVDIPGLEGLKSLRRLYLGGCVACSSQIRKRLSKV 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02397 679 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 266 416 - -
Cca01g02397 679 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 210 322 - -
Cca01g02397 679 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 397 675 - -
Cca01g02397 679 SUPERFAMILY L domain-like 72 416 - -
Cca01g02397 679 ProSiteProfiles Leucine-rich repeat profile. 148 170 IPR001611 GO:0005515
Cca01g02397 679 PANTHER - 266 416 - -
Cca01g02397 679 PANTHER - 210 322 - -
Cca01g02397 679 PANTHER - 397 675 - -
Cca01g02397 679 SMART LRR_typ_2 429 452 IPR003591 -
Cca01g02397 679 SMART LRR_typ_2 288 311 IPR003591 -
Cca01g02397 679 SMART LRR_typ_2 564 586 IPR003591 -
Cca01g02397 679 SMART LRR_typ_2 382 405 IPR003591 -
Cca01g02397 679 SMART LRR_typ_2 241 264 IPR003591 -
Cca01g02397 679 SMART LRR_typ_2 335 358 IPR003591 -
Cca01g02397 679 SUPERFAMILY L domain-like 372 666 - -
Cca01g02397 679 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 75 261 - -
Cca01g02397 679 PANTHER - 75 261 - -
Cca01g02397 679 Gene3D Ribonuclease Inhibitor 254 350 IPR032675 -
Cca01g02397 679 Gene3D Ribonuclease Inhibitor 63 246 IPR032675 -
Cca01g02397 679 Gene3D Ribonuclease Inhibitor 351 527 IPR032675 -
Cca01g02397 679 Gene3D Ribonuclease Inhibitor 528 674 IPR032675 -
Cca01g02397 679 SMART LRR_CC_2 631 660 IPR006553 -
Cca01g02397 679 SMART LRR_CC_2 405 432 IPR006553 -
Cca01g02397 679 SMART LRR_CC_2 358 385 IPR006553 -
Cca01g02397 679 SMART LRR_CC_2 169 202 IPR006553 -
Cca01g02397 679 SMART LRR_CC_2 311 338 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02397 Cca-Chr1 52821252 52824589 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02397 228 517 WRKY Transcription Factor Family AT4G12020 26.115 1.56e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02397 - - ccaj:109813420 1204.89