Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02396 atGGGCAGGCAAATTGTTCTAGATGAAAACCTCGTTGATCCCGGTATGCGTAGCAGATTGTGGGATCGTGCTCAAATCATGGCTGTTTTGAAGGGTCACGCGGGAACTAGATCTATTCAAGGAATTGTGTTTGATTTTGAGGAAGAAAGATTTTATAAAACCAAGGCTGAATCAGTTTTTTCAAAGAATCTTCAGGGGAGATTAAGCTTAAAAAATGTATCAACATACATCAAACAATGCCTTAAGAATTGTCTCCGACCTCAAGCAGAGGAAAACAAAGAGGTTGTACTTCATACGAAATCCTTTGAACCAATGGTTAATCTGAGACAGCTTCAGATCAATAATCTGAAATTAGAAGGAAAGTTTCTTCCAGCTGAACTGAAATGGCTACAGTGGCAAGGGTGTCCTTTAGAACGCATGCCTTTGGAATTTTGGCCACGAGAGCTGACTGTCCTTGATCTCAGAAACAGCAAGAAAATAGAAACCTTGTGGGCATGGAATGGTTCCAAGGTGCCACAGAACTTAATGGTTTTGAACCTTTCCTACTGCACGCAACTCACTTCTATCCCTGATTTATCTGGGTGTCAACATCTAGAGAAGATTGATCTGGAGAACTGCATTAATCTAACTAAGATTCATGAATCAATTGGCAGTTTGAGAACCTTGCGTAGTTTAAATTTGACTCGTTGTTCAAACCTTTTCGACCTTCCGATTGATGTCTCAGGGCTTAAAGATCTAGAGAGCCTTTTTCTCTCTGGCTGCTCCAAGTTGAAAACATTACCAGAAAACATAGGCATCCTGAAATCCTTGAAAGCACTTCATGCTGATAACACAGCTATAGCTGAGATGCCCCAGTCCATTTTTCGCCTCACCAAACTAGAACGGCTTGTTTTAGAAGGTTGCCAACATTTGAGAAGGCTACCTAGTTCTATAGGACATCTATGTTCTTTGCAAGAATTATCTCTATACCGGTCTGGATTAGAAGAATTACCTGACTCTGTTGGAACATTGAATAACCTTGAGAGACTCAATTTGATGTGGTGTGAATCTTTCACTATAATTCCTGAGTCTATAGGCAATCTCATTTCACTGACAGAACTTTTATTTGATAGAACTGCAATTAAAGAACTTCCTTCTGCCATTGGTTCTTTATCTTGCCTGAGGGAGTTATCAGTTGGAAATTGTAAATTTCTCACTTCATTGCCAAATTCAATTAAAACTTTGGCCTCACTTGTTGAGCTTCACTTAGATGGTACAACCATCACAAATTTGCCAGATGAGATTGGAGAGATGAAGCTACTGAGGAAACTTGAGATGATGAACTGTAAAGATCTTGAATATTTACCAGAATCTATTGGCCACCTAGCATCTCTTACTTCACTGAACATGGTCAATGGAAATATCAGGGAATTGCCAGAATCCACTGGATTGCTAGAAAATCTTGTCACCTTAAGATTGAACAAATGTAGAATGCTCAGAAAGCTTCCACCTTCTATCGGAAATTTGAAATCTCTACATCACTTTCTCATGGAGGAAACGGCTGGGTCAAACTTACCTGAAAGCTTCGGTATGCTCTCAAGCTTGAGAACATTGAGAATGGCAAAGAAGCCTGATTTAAATTCCAATGAAAACAGCTTCCTTACAGAACCTGAAGAGAAACCCAGCCCTTTTGTACTAACATCTTCCTTCTGCAATCTGACCTTGCTAACAGAGCTTGACGCCCGAGCGTGGAGAATATCTGGGAAAATTCCAGATCAATTTGAGAACTTATCAGTATTAGAGACTTTAAATTTGGGCATGAATGATTTTCACAGCCTTCCTTCCAGCTTGAAGGGCCTTTCTATTCTCAAAGTGCTTTCACTTCCAAACTGCACTCAGTTGATCTCTCTCCCTTCACTTCCTTCAAGCTTGATTGAGTTGAATGTTGAAAACTGCTCTGTATTAGAAACTATCCATGACATGTCAAATTTAGAGAGCCTACAGGAGTTGAAACTCACAAACTGTGTAAAAGTGGTGGATATTCCTGGTCTTGAAAGTTTGAAGTCCTTGAGAAGATTGTACCTTAGTGGTTGCACTGCATGTTCCACACGAATCCGCAAGAGACTTTCAAAGGTTGTGGCATTGAGGAATTTACAGAACTTGAGCATGCCAGGAAGCAAATTACCAGAATGGTTTTCAGGACAAACTATCAGCTTCTCCAAGCCTAAAAATCTTGAGCTAAAAGGTGTAATAGTTGGTGTTGTTCTTTCAATCAACCATGGCATTGATATACCTAATATGAAGCGAGAACATATGCCTGGAGTGGTTGATGTTCAAGCAAATGTTCTCAAACAGGGCAAGACTCTGTTTAGTACAGTGTTAAACATTCGTGGGGTGCCAAGGACAGATGAAGAACACATACACCTGTGTAGGTTCCATGATTACCATCAGCTGATAGCTTTTTTGAAAGATGCTGATGCATTGTGTGTGAGTAAGAGAAATCCACCTTTTGATAAGGGGTTGGAGTTAAAAAAATGTGGGGTTCATATAATCTTTGAAGGGGACGATGATTATGATGGAGGCGAAGAATCACTAGACAAAGGCCTACAATCTATCTCAGAAAAATTGGCCAATTTTTTCAGCAGTGATGAAGGTGGTGCTCCTATCTACCGATAA 2655 0.4 MGRQIVLDENLVDPGMRSRLWDRAQIMAVLKGHAGTRSIQGIVFDFEEERFYKTKAESVFSKNLQGRLSLKNVSTYIKQCLKNCLRPQAEENKEVVLHTKSFEPMVNLRQLQINNLKLEGKFLPAELKWLQWQGCPLERMPLEFWPRELTVLDLRNSKKIETLWAWNGSKVPQNLMVLNLSYCTQLTSIPDLSGCQHLEKIDLENCINLTKIHESIGSLRTLRSLNLTRCSNLFDLPIDVSGLKDLESLFLSGCSKLKTLPENIGILKSLKALHADNTAIAEMPQSIFRLTKLERLVLEGCQHLRRLPSSIGHLCSLQELSLYRSGLEELPDSVGTLNNLERLNLMWCESFTIIPESIGNLISLTELLFDRTAIKELPSAIGSLSCLRELSVGNCKFLTSLPNSIKTLASLVELHLDGTTITNLPDEIGEMKLLRKLEMMNCKDLEYLPESIGHLASLTSLNMVNGNIRELPESTGLLENLVTLRLNKCRMLRKLPPSIGNLKSLHHFLMEETAGSNLPESFGMLSSLRTLRMAKKPDLNSNENSFLTEPEEKPSPFVLTSSFCNLTLLTELDARAWRISGKIPDQFENLSVLETLNLGMNDFHSLPSSLKGLSILKVLSLPNCTQLISLPSLPSSLIELNVENCSVLETIHDMSNLESLQELKLTNCVKVVDIPGLESLKSLRRLYLSGCTACSTRIRKRLSKVVALRNLQNLSMPGSKLPEWFSGQTISFSKPKNLELKGVIVGVVLSINHGIDIPNMKREHMPGVVDVQANVLKQGKTLFSTVLNIRGVPRTDEEHIHLCRFHDYHQLIAFLKDADALCVSKRNPPFDKGLELKKCGVHIIFEGDDDYDGGEESLDKGLQSISEKLANFFSSDEGGAPIYR 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02396 884 Gene3D Ribonuclease Inhibitor 66 260 IPR032675 -
Cca01g02396 884 Gene3D Ribonuclease Inhibitor 261 419 IPR032675 -
Cca01g02396 884 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 834 IPR044974 GO:0006952
Cca01g02396 884 PANTHER TMV RESISTANCE PROTEIN N-LIKE 1 834 - -
Cca01g02396 884 ProSiteProfiles Leucine-rich repeat profile. 174 196 IPR001611 GO:0005515
Cca01g02396 884 SMART LRR_typ_2 361 384 IPR003591 -
Cca01g02396 884 SMART LRR_typ_2 408 431 IPR003591 -
Cca01g02396 884 SMART LRR_typ_2 590 612 IPR003591 -
Cca01g02396 884 SMART LRR_typ_2 455 478 IPR003591 -
Cca01g02396 884 SMART LRR_typ_2 314 337 IPR003591 -
Cca01g02396 884 SMART LRR_typ_2 267 290 IPR003591 -
Cca01g02396 884 SUPERFAMILY L domain-like 311 691 - -
Cca01g02396 884 SUPERFAMILY L domain-like 99 425 - -
Cca01g02396 884 Gene3D Ribonuclease Inhibitor 420 753 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02396 Cca-Chr1 52801364 52806025 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02396 254 513 WRKY Transcription Factor Family AT4G12020 26.812 2.44e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02396 - - ccaj:109813420 1719.13