Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02395 ATGCCATATGAGTATCGGGTCGTGGGCTTGCCACTATTGGAACGTGTGAGTGGGAGGTTGTGCAGTGGGAATGCAAGGATGAGATGGGAGCCACAGCCCGCAGTGTCGCACCAGCCCGCACGCACCACTCCATCTCAAATCAGTGTGATTCTTCGAGACTCTCATGGAATTGCTGAGGTGAAGAGTGTCACCCGAAGCAAGATTCTCTGTATATTGAAGGCTCACGGTATGGTGTTTCCCCTTTTGCTTGGTTTTATAATTTTTTGGGATGAGTTCGTTCACCTGCACAAAGCTCATGTTATAGCAAACTTGGGCCTTTGCATTTCCGTCTATGATATCAGATCCATTGATGGTGGATTTATCTTTGCTAGTGATGGGGCTCCAACCTTTACGGTATGA 399 0.4787 MPYEYRVVGLPLLERVSGRLCSGNARMRWEPQPAVSHQPARTTPSQISVILRDSHGIAEVKSVTRSKILCILKAHGMVFPLLLGFIIFWDEFVHLHKAHVIANLGLCISVYDIRSIDGGFIFASDGAPTFTV 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02395 132 Gene3D - 38 78 - -
Cca01g02395 132 PANTHER RIBOSOMAL PROTEIN S15-RELATED 42 78 - -
Cca01g02395 132 PANTHER RIBOSOMAL PROTEIN S15P/S13E 42 78 IPR023029 -
Cca01g02395 132 SUPERFAMILY N-terminal, heterodimerisation domain of RBP7 (RpoE) 91 132 IPR036898 -
Cca01g02395 132 Gene3D - 87 132 IPR036898 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02395 Cca-Chr1 52798921 52801328 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02395 43 78 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 80.556 8.68e-12 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02395 - - gmx:100808954 64.6994