Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02394 ATGTCCATAAACAATAATATGATAGATGTTTTGCAAGATCAAAAGTGGGAGTCTATACCCTGGAAAAAGTTGCAGGTTGGAGACATCATCAAGGTTAAGCAGGATGGATTCTTTCCTGCAGATCTGCTTTTATTGGCTAGCACTAATGCAGACGGTGTCTGCTACATTGAGACTGCTAATTTGGATGGGGAAACCAATTTGAAGATTAGAAAAGCATTGGAAAAGACTTGGGATTACGTGACTCCAGAGAAGGCATCTGAATTTAAAGGTGAAATTCAATGTGAACAACCAAACAATTCCTTGTACACCTTTACTGGAAATCTTCTAATTCAAAAGCAAACACTGCCTCTCAGTCCAAATCAAATTTTGTTGCGAGGTTGCAGTCTCAGGAATACAGAGTATATTGTTGGGGTTGTTATATTTACAGGACATGAAACAAAGGTGATGATGAATGCAATGAATGTTCCTTCCAAAAGAAGTACATTGGAGAGGAAGCTTGACAAACTCATACTAACTCTATTTGCAACTCTATTCATGATGTGTTTTATCGGAGCCATAGGCAGTGCTATCTTTGTAAACAAAAAATATTTTTACTTGCATCTTGATTCATCAGAGAAGGGCTCAGCACAGTTCAACCCCAGAAACAGATTTTTGGTTTTTCTCCTTACTATGTTTACCCTTATCACACTATACTCAACAATCATCCCCATTTCACTTTATGTGTCCATAGAGATGATAAAATTTATTCAGTCAACTCAATTTATCAACAAGGACTTGTGCATGTACCATAGTGAAACCAATACACCTGCATTGGCCAGAACTTCAAATCTGAATGAAGAACTTGGGCAGGTGGAATACATTTTCTCTGACAAAACTGGGACTCTGACAAGGAATTTAATGGAGTTCTTCAAGTGTTCAATTGGAGGAGAGGTCTATGGAAATGGTGTGACTGAAATTGAGAGAGGATTAGCAGAGCGCAATGGCATGAAGATTGATGTAATATATTTAAATGTATTGTGTGGAAGTAGTTTATCTATTACAAAGGATTGTGGTTATATTTTATTTTCTCTACAGGAAAATAAATCTGCCAATGCAGTGCAGGAGAGGGGTTTTAATTTTGATGATGCGAGGCTTATGAGAGGAGCTTGGAGGAATGAGCCTAATCCTGATGTCTGCAAGgaattcttcagatgccttgctatatgtcATACTGTACTGCCCGAGGGTGAGGAGTCCCCTGAAAAGATCAAATATCAAGCTGCATCACCTGATGAGGCTGCTTTGGTTATTGCTGCAAAAAACTTTGGTTTCTTTTTCTACAGACGCACACCTACAACGATCAATGTTCGTGAATCTCATGTTGAGAAAATGGGCAAAATTCAAGATGTGTCTTATGAGATTTTAAATGTGCTTGAGTTTAATAGTACAAGGAAGCGTCAGTCTGTTGTATGTCGTTATCCAGATGGAAGGCTTGTACTATACTGTAAGGGTGCTGATACGGTAATCTATGAGAGATTGGCTGATGGTAATACTAATAATAATATCAAGAAAGTCACCAGGGAGCATTTGGAACTATTTGGATCTGCTGGACTACGTACATTATGCCTAGCCTACAAAGAATTGCATCCTGATGTTTATGAAAGCTGGAATGAGAAGTTTATCCAGGCCAAGTCTTCTCTAAATGATCGTGAAAAGAAGTTGGATGAGGTGGCAGAACTTATTGAAAATGATCTCATTTTAATCGGTAGCACAGCCATAGAAGACAAACTTCAAGAGGGAGTACCAGCTTGCATAGAAACTCTTCAAAGAGCTGGTATTAAAATTTGGGTTCTTACAGGGGACAAGATTGAAACAGCAATAAACATAGCCTATGCATGCAACTTAATAAACAATGAGATGAAGCAATTTGTCATTAGTTCAGAAACGGATGCCATTAGAGAAGTTGAAGACAGGGGTGACCAAGTGGAAATTGCACGATTTATCAAAGATGAAGTGAAAAGAGAGCTAAAGAAATGCCTTGAGGAAGCAGAGAGCTATTTTCACTCCCTATCTGGACCAAAGTTAGCACTTGTGATTGATGGGAAATGTCTAATGTATGCATTGGATCCAAGTTTAAGGGTGATGCTGCTCAATCTAAGTTTGAATTGTCATTCTGTTGTTTGCTGCCGAGTTTCTCCTTTACAGAAAGCACAGGTCACGAGTATGGTAAAGAAAGGTGCACGAAAAATAACACTTAGTATTGGTGATGGAGCCAATGATGTTAGCATGATTCAAGCTGCGCATGTTGGCATTGGCATAAGTGGGATGGAGGGAATGCAAGCTGTGATGGCCAGTGATTTTGCCATTGCACAGTTTCGTTACCTTGCAGATTTGCTTCTTGTTCATGGACGATGGTCATATTTACGAATATGCAAGGTTGTGATATACTTCTTTTACAAGAATCTCACTTTCACTCTTACTCAGTTTTGGTTTACCTTTCAAACTGGGTTTTCTGGTCAGAGATTCTATGATGATTGGTTTCAGTCATTATATAATGTTATCTTCACAGCATTGCCAGTAATCATTGTTGGATTATTTGACAAGGATGTCAGTTCATCTTTATCCAAGAAGTATCCTGAACTATACATGGAAGGAATAAAAAATGTTTTCTTCAAATGGAAAGTTGTGGCCATATGGGCCTTCTTTTCTGTATACCAGTCTCTAATATTCTTCTATTTTGTGAGCACAACAAATTTAAGAAAGATATTTGGACTCTGGGATGTCAGTACAATGGCCTTCACTTGTGTTGTAATAACTGTCAACTTGCGACTACTTATGATTTGTAATTCAATCACAAGATGGCACTATATTAGTGTTGGTGGGAGTATATTAGCCTGGTTTATTTTTATTTTTATATATTCAGGGATTTCCACACCTTATGATCGTCAGGAGAATATTTATTTTGTCATATATGTCTTGATGAGtacgttctacttctacatcatgctacttctagttcCTGCTGCTGCACTTTTCTGTGACTTTGTTTACCAAGGGGTTCAAAGATGGTTCTTCCCCTATGATTATCAGATTATTCAAGAAATGCATAGAGACGAGGTGGATAACACTGGTAGGGCACAGCTGCTGGAGGTAGGAAACCAGCTTACGCCAGCTGAGGCAAGGAGTTATGCTATATCTCAACTCCCACGTGAGCTATCAAAGCACACCGGCTTTGCTTTCGATTCACCGGGGTACGAATCCTTTTTTGCTGCACAGCTTGGTGTATATGCCCCACCAAAGGCATGGGATGTTGCAAGACGAGCTAGCATGAGATCAAAGCCTAAGATTGGACACAAAAAGTAA 3342 0.3815 MSINNNMIDVLQDQKWESIPWKKLQVGDIIKVKQDGFFPADLLLLASTNADGVCYIETANLDGETNLKIRKALEKTWDYVTPEKASEFKGEIQCEQPNNSLYTFTGNLLIQKQTLPLSPNQILLRGCSLRNTEYIVGVVIFTGHETKVMMNAMNVPSKRSTLERKLDKLILTLFATLFMMCFIGAIGSAIFVNKKYFYLHLDSSEKGSAQFNPRNRFLVFLLTMFTLITLYSTIIPISLYVSIEMIKFIQSTQFINKDLCMYHSETNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEVYGNGVTEIERGLAERNGMKIDVIYLNVLCGSSLSITKDCGYILFSLQENKSANAVQERGFNFDDARLMRGAWRNEPNPDVCKEFFRCLAICHTVLPEGEESPEKIKYQAASPDEAALVIAAKNFGFFFYRRTPTTINVRESHVEKMGKIQDVSYEILNVLEFNSTRKRQSVVCRYPDGRLVLYCKGADTVIYERLADGNTNNNIKKVTREHLELFGSAGLRTLCLAYKELHPDVYESWNEKFIQAKSSLNDREKKLDEVAELIENDLILIGSTAIEDKLQEGVPACIETLQRAGIKIWVLTGDKIETAINIAYACNLINNEMKQFVISSETDAIREVEDRGDQVEIARFIKDEVKRELKKCLEEAESYFHSLSGPKLALVIDGKCLMYALDPSLRVMLLNLSLNCHSVVCCRVSPLQKAQVTSMVKKGARKITLSIGDGANDVSMIQAAHVGIGISGMEGMQAVMASDFAIAQFRYLADLLLVHGRWSYLRICKVVIYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSSSLSKKYPELYMEGIKNVFFKWKVVAIWAFFSVYQSLIFFYFVSTTNLRKIFGLWDVSTMAFTCVVITVNLRLLMICNSITRWHYISVGGSILAWFIFIFIYSGISTPYDRQENIYFVIYVLMSTFYFYIMLLLVPAAALFCDFVYQGVQRWFFPYDYQIIQEMHRDEVDNTGRAQLLEVGNQLTPAEARSYAISQLPRELSKHTGFAFDSPGYESFFAAQLGVYAPPKAWDVARRASMRSKPKIGHKK 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02394 1113 Pfam Phospholipid-translocating P-type ATPase C-terminal 775 1019 IPR032630 -
Cca01g02394 1113 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1107 - -
Cca01g02394 1113 CDD P-type_ATPase_APLT_Dnf-like 3 907 - -
Cca01g02394 1113 SFLD p-type atpase 270 798 IPR044492 -
Cca01g02394 1113 PRINTS P-type cation-transporting ATPase superfamily signature 288 302 - -
Cca01g02394 1113 PRINTS P-type cation-transporting ATPase superfamily signature 747 766 - -
Cca01g02394 1113 SUPERFAMILY HAD-like 283 803 IPR036412 -
Cca01g02394 1113 SUPERFAMILY Calcium ATPase, transmembrane domain M 71 1019 IPR023298 -
Cca01g02394 1113 Gene3D - 1 153 - -
Cca01g02394 1113 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 720 826 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca01g02394 1113 Gene3D - 580 787 IPR023214 -
Cca01g02394 1113 SUPERFAMILY Calcium ATPase, transduction domain A 5 149 IPR008250 -
Cca01g02394 1113 Gene3D - 442 579 IPR023299 GO:0000166
Cca01g02394 1113 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 365 585 IPR023299 GO:0000166
Cca01g02394 1113 Pfam Cation transport ATPase (P-type) 409 505 - -
Cca01g02394 1113 Pfam E1-E2 ATPase 5 244 - -
Cca01g02394 1113 SFLD C1.7: P-type atpase like 270 798 - -
Cca01g02394 1113 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1107 - -
Cca01g02394 1113 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 2 1027 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cca01g02394 1113 ProSitePatterns E1-E2 ATPases phosphorylation site. 290 296 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02394 Cca-Chr1 52774168 52796181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02394 1 1112 Primary Pumps ATPases AT1G59820 77.549 0.0 1840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02394 K14802 - gmx:100815547 2058.49