Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02393 ATGGTGATAGAGATTGCAAAATCAACAACTAAGCAAGTTAAAGAGCTCATAGAGAAGATCACCACCAATATAATTGAAAGTGACAATCCAATTAACATTGAGCACCACTTTACAGCTCAAAATCTTAGGTACATTGAGCGTTTATATGGCGACCAAGGGCTTAATATGCTGGATGCAGCAAGGAAGAATGCATCTCAAGTTTTGCCAGTCATTTTAACCAGATTGAAGCAGAAACGGAAAGAGTGGAGAAGTTTTCGTGCAGATTTTAATAAGATTTGTGCCGAAGTATATGCTGAGAACTATTACAAATCACTTGATTATCGTAGCTTCCACAACAACATACATCAAACCTTTCTTCCACCCAACAAGGATAAGGCAAGAGATTTAATCATCGGATTCATATTTGGGGCTTTTACCTCTATCATTCTCCACAAAGTCCATATGTCCGCCCAACTTGTTTCCACCCCTAACCTATATAAGTATCACATTGTGAACCCTTCACTTTTAAAATTGGGTTTAAACCTGCTCTTTTGTGCTGCAAATTATCGTCACGTTGCTTTGCATCAAAGAATGAAAAGGTCCAGGGATAATGTTTACCCGAATTCACAACACAAACCGCCCATGGTGTCTTTCAGAGTAGAACCCTCGGAGCAACCACAGATGACCAGGGGTGTCTCTCAGAAACAAGCCACAGATGATGCCTTGGCATATCTTAAGGCAGTAAAGTACATGTTCCAAGATAAGGGGGAAAAATATGATGACTTTCTCGAAGTCATGAAGGATTTCAAGTTTCAAAGAATTGATATAACAGGTGTCACAACAAGAGTCAAGGAGCTGTTTAAAGGGAAGAAAGATCTAATATTGGGATTTAACACCTTCTTGCCAAAGGGACATGAAATTACCCTTTCATTGGAGGATGAACATCCTCCCCAAAAGAAGCCCGTTGAATTTGAGGAAGCCATAAATTTTGTGGGCAAGATTAAAGTATTTTTTTATTTAATAGTTGATACATATTATTTGTCTTCCAATACATATCAGATTGATTGGGTTCCTTTCATACAGACTCGTTTTCAAGGCAATGACCATGTTTGTAAGTCATTTTATGACATATTAAATATGTACAGAAAGGAAACCAAGCCTATCTCTGAGGTTTACCAGGAGGTTGCTGGAATTTTCCAGGACCATGCAGATCTTCTTGAGGAATTTACTCATTTTCTTCCTGATAATTCAGGAACAGCCTCTACTCAAAATTCTCTCTTTTGTCGCAGGAGCTCTGCAATGCCAATAGTGAGGCAAATGCATGTTGAAAAGAGAGAAAGGACCATAACTTCACATGGTGATCGTGACCTCAATGCTGACCATCGTGATCCAGAAGTTGGCAGGTGTTTGGTGAAGGCTGATAAAGATCAGAGGAGGCATGATGTGAAGGAAAAGGATCGTAGAGAAGAGAGAGTTAAGAGACAGCAGGAAAGGGATGATAGAGATTGTGATAATGATGGTAGTAGGGAGTGTTTATCTCACAAGCAGAAATCTGGTTGTAGGGCCGAAGACTCTGGTGCTGAACAGTTGCATGATACTGATGAAAATTTTGGCATGCAGCCTATCACATCTGCCTCTGAGGATATAAGTTATTTGAAAAGTATGTGTAGTCCCCTGCTTGGTTACCTAGAAAAAGTCAAGGAGAAATTACGAAATCCTGAGGATTACCAGGAATTTTTGAAGTGCCTACATATCTACAGCAAGGAAATAATTATGAAAGAAGAATTGCAATCATCAGTATGGTTTATACTTTTAACTTTTGTTAGCTTCTTTTCTGGTTTTTTTGGACCAAAAAGTCTGACTGTTATTTATTCATCAAACTTCTTTTGGCATGAAGGACATGGACCAACAAAACCAATGATGGTAGAAGACTGGAATCAAGATAGTGATAGGGATAACAGGATGAAAAAAAGGGATCACAAATGCAGAGAAAATGACAAATCCAATGCAACTACTCACAAAGATGTTTCAGTTCCTAAGATGTCTCTGTATGCCAGCAAGGATAAGTATGCAGTGAAACCTATAAGTGAGCTGGACCTTTCTGACTTTGAGCAACGCACTCCTAGTTACCGTCTTCTACCAAAAAATTACCCAATACCGCCAGCCAGCCAGAAAACAGAACATGGTGCAGAGGTATTGAATGATCGCTGGGTTTCTGTTAGTTCTGGCTGTGAGAACCATTCCTTTAAGCACATGCACAAAAACCAGCATGAGGAGAGCTTGTTTAGATGTGAAGATGACCGGTTTGAACTTGATATGTTGTTAGAGTCTGTAAATGCGACAATGAAACGAGTTGAAGAGATCTTAGAAAAGATAAATGCTAATATAATTGAAGGATATGGTCCAATTCGTGTGGAGGAGCACTTAACAGCTCTAAATCTCAGGTGCATTGAGAGACTATATGGTGATCATGGGCTTGAAGTAATTGACGAGCTAAAGAAGAATGCATCTTTAGTTTTGCCAGTCATATTAACCCGCTTGAAGCAGAAACAGGATGAGTGGGCAAGGTGTCGTGCTGATTTTCATGAAGTTTGGGCTGAAATATGTGCAAAGAACTATCATAAATCACTTGATCCCCATACTACTTACTCTAAGAAGCAGGATACAAAATGCTTGAGCACTATAGAACTTACTGCTACTACTCCATCAAGACGTTGTAAATTTTCCGGTGAGGGAGAACTTGATTTACCTTCATTAGAGGAGACATCATCAATATTTGTCTCACAAGTTGTTGATCACGATTCCAATGATATTATTAGTAGAGCCTTGAATGTCCCTGAGCGCCCAGATCGTGCTTGA 2838 0.3936 MVIEIAKSTTKQVKELIEKITTNIIESDNPINIEHHFTAQNLRYIERLYGDQGLNMLDAARKNASQVLPVILTRLKQKRKEWRSFRADFNKICAEVYAENYYKSLDYRSFHNNIHQTFLPPNKDKARDLIIGFIFGAFTSIILHKVHMSAQLVSTPNLYKYHIVNPSLLKLGLNLLFCAANYRHVALHQRMKRSRDNVYPNSQHKPPMVSFRVEPSEQPQMTRGVSQKQATDDALAYLKAVKYMFQDKGEKYDDFLEVMKDFKFQRIDITGVTTRVKELFKGKKDLILGFNTFLPKGHEITLSLEDEHPPQKKPVEFEEAINFVGKIKVFFYLIVDTYYLSSNTYQIDWVPFIQTRFQGNDHVCKSFYDILNMYRKETKPISEVYQEVAGIFQDHADLLEEFTHFLPDNSGTASTQNSLFCRRSSAMPIVRQMHVEKRERTITSHGDRDLNADHRDPEVGRCLVKADKDQRRHDVKEKDRREERVKRQQERDDRDCDNDGSRECLSHKQKSGCRAEDSGAEQLHDTDENFGMQPITSASEDISYLKSMCSPLLGYLEKVKEKLRNPEDYQEFLKCLHIYSKEIIMKEELQSSVWFILLTFVSFFSGFFGPKSLTVIYSSNFFWHEGHGPTKPMMVEDWNQDSDRDNRMKKRDHKCRENDKSNATTHKDVSVPKMSLYASKDKYAVKPISELDLSDFEQRTPSYRLLPKNYPIPPASQKTEHGAEVLNDRWVSVSSGCENHSFKHMHKNQHEESLFRCEDDRFELDMLLESVNATMKRVEEILEKINANIIEGYGPIRVEEHLTALNLRCIERLYGDHGLEVIDELKKNASLVLPVILTRLKQKQDEWARCRADFHEVWAEICAKNYHKSLDPHTTYSKKQDTKCLSTIELTATTPSRRCKFSGEGELDLPSLEETSSIFVSQVVDHDSNDIISRALNVPERPDRA 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02393 945 Gene3D Paired amphipathic helix 233 295 IPR036600 GO:0006355
Cca01g02393 945 PANTHER SIN3B-RELATED 1 111 IPR039774 GO:0003714
Cca01g02393 945 PANTHER SIN3B-RELATED 194 892 IPR039774 GO:0003714
Cca01g02393 945 Coils Coil 768 788 - -
Cca01g02393 945 Gene3D Paired amphipathic helix 545 608 IPR036600 GO:0006355
Cca01g02393 945 ProSiteProfiles PAH domain profile. 227 297 IPR003822 GO:0006355
Cca01g02393 945 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 111 - -
Cca01g02393 945 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 194 892 - -
Cca01g02393 945 SMART hdac_interact2seq4b 695 795 IPR013194 -
Cca01g02393 945 SUPERFAMILY PAH2 domain 347 408 IPR036600 GO:0006355
Cca01g02393 945 MobiDBLite consensus disorder prediction 436 531 - -
Cca01g02393 945 SUPERFAMILY PAH2 domain 225 296 IPR036600 GO:0006355
Cca01g02393 945 ProSiteProfiles PAH domain profile. 313 409 IPR003822 GO:0006355
Cca01g02393 945 MobiDBLite consensus disorder prediction 642 666 - -
Cca01g02393 945 MobiDBLite consensus disorder prediction 436 524 - -
Cca01g02393 945 SUPERFAMILY PAH2 domain 552 607 IPR036600 GO:0006355
Cca01g02393 945 Gene3D Paired amphipathic helix 343 410 IPR036600 GO:0006355
Cca01g02393 945 Pfam Sin3 family co-repressor 698 788 IPR013194 -
Cca01g02393 945 Pfam Paired amphipathic helix repeat 250 294 IPR003822 GO:0006355
Cca01g02393 945 Pfam Paired amphipathic helix repeat 365 406 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02393 Cca-Chr1 52747991 52768507 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02393 230 309 WRKY Transcription Factor Family AT4G12020 57.500 5.82e-19 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca01g02393 Sin3_corepress 1.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02393 K11644 - gmx:100781798 907.516