Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02392 ATGAGGGCAGAAGACAGAAGTATAGCTACCGCATTGGCGCATTGTGAACTCTCTCACCTTCATACTGTGAATTTGTGTTCGACCTCTTTCTTTTCTGCCGCAGATTATCGTCACGTTGCTTTGCTTTCAACGATGAAGAGGTCAAGGGATGATGATAAACTGCCCATGGTGTCTTCTAGTGTGGAACCCTTGGGGAAACCACAAATGACGAGCGGGGGTTGGCAGAAACTAACCACAAATGATGCTTTGGCATATCTCAAGACAGTAAAGGACAAGTTTCAAGATAAGACGGAAAAGTATGATGACTTTCTGGAAGTCATGAAGGATTTCAAGGCTCAAAGAATTGATACAACAGGTGTCATAGAAAGAGTGAAGGAGCTGTTTAAAGGGCACAAAGATCTAATTTTAGGATTTAACACCTTTTTGCCCAAGGGATATGAAATTACCCTTCCGTTGGAAGATGAACAACCTACACAAAAGAAGCCTGTTGAATTTGCAGAAGCCATAAATTTTGTGGGCAAGATTAAGAATCGTTTTCAAGGCAATGACCGTGTTTATAAGTCATTTCTAGACATATTAAATATGTACAGAAAAGAAACAAAGTCTATCACTGAGGTTTACCAGGAGGTTGCTTCACTTTTCCAGGACCATGCAGATCTTCTTGAGGAGTTTACTCATTTTCTTCCTGATACTTCAGGAACAGCCTCTACTCATTATGCTTCTGCCCGAAATTCTCTCCTTCGTGATAGGAGCTCTGCAATGCCAACAGTGAGGCAAATGCATGTTGAAAAGAGAGAAAGAACCATAGCTTCACATGGTGATCGTGACCTCAGTGCTGATCATCCTGATCCAGAACTTGACAGATTTTTTATTAGGGCTGATAAGGATCAGAGGAGGCGTGGTGAGAAGGAAAAGGACCGTAGAGAAGAGAGAGACAGGAGGCAACGGGAAAGAGATGATAGAGATTATGATCATGATGGTAATAGGGAGAATTTATCTCACAAGCAGAAATCTGGTTGTAAAGCTGAAGACTGTGGTGCTGAAACATTGCATGATACTGACGAAAATTTTGGCATGCACCCTATCTCAACTGCTTGTGAAGATAAAAGTTCTGTGAAAAGTATGTACAGTTCAGTGCTTGGTTACCTTGACAAAGTGAAGGAGAAATTACGGAATCCTGAGGATTACCAGGAATTTTTGAAGTGCCTAAATATCTACAGCAAGGAAATAATTGCCCGACATGAATTGCAATCATTGGTGGGCAATTTACTGGGAAAATATGCTGATATAATGGAGGGATTTGATGAATTTTTGACTCAATGTGAGAAGAATGAAGGATTCCTTCCTGGTCTCCTGAAAAAAAAGTCCTTTTTGCATGAAGGACATGGACCAAAACCGATGAATGCAGAGGTCAGGGATCGAGATCGTGATAGGGATGATAGGATGAAAGAAAGGGATCGTTTAATGGCCACCTCAAGCAAACATGGGAATTTTGATACCCAAGGACCTTGCCAAAATAGAACAAACTTACCATCTCCAAGGCGCCAAGTGATATGTGGAACAAAACTAGGCCAAGGTACAAATGCCTAA 1590 0.4132 MRAEDRSIATALAHCELSHLHTVNLCSTSFFSAADYRHVALLSTMKRSRDDDKLPMVSSSVEPLGKPQMTSGGWQKLTTNDALAYLKTVKDKFQDKTEKYDDFLEVMKDFKAQRIDTTGVIERVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPTQKKPVEFAEAINFVGKIKNRFQGNDRVYKSFLDILNMYRKETKSITEVYQEVASLFQDHADLLEEFTHFLPDTSGTASTHYASARNSLLRDRSSAMPTVRQMHVEKRERTIASHGDRDLSADHPDPELDRFFIRADKDQRRRGEKEKDRREERDRRQRERDDRDYDHDGNRENLSHKQKSGCKAEDCGAETLHDTDENFGMHPISTACEDKSSVKSMYSSVLGYLDKVKEKLRNPEDYQEFLKCLNIYSKEIIARHELQSLVGNLLGKYADIMEGFDEFLTQCEKNEGFLPGLLKKKSFLHEGHGPKPMNAEVRDRDRDRDDRMKERDRLMATSSKHGNFDTQGPCQNRTNLPSPRRQVICGTKLGQGTNA 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02392 529 SUPERFAMILY PAH2 domain 159 230 IPR036600 GO:0006355
Cca01g02392 529 MobiDBLite consensus disorder prediction 493 513 - -
Cca01g02392 529 Gene3D Paired amphipathic helix 371 443 IPR036600 GO:0006355
Cca01g02392 529 ProSiteProfiles PAH domain profile. 161 231 IPR003822 GO:0006355
Cca01g02392 529 ProSiteProfiles PAH domain profile. 372 441 IPR003822 GO:0006355
Cca01g02392 529 ProSiteProfiles PAH domain profile. 75 145 IPR003822 GO:0006355
Cca01g02392 529 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 64 457 - -
Cca01g02392 529 MobiDBLite consensus disorder prediction 458 492 - -
Cca01g02392 529 MobiDBLite consensus disorder prediction 259 342 - -
Cca01g02392 529 Gene3D Paired amphipathic helix 81 143 IPR036600 GO:0006355
Cca01g02392 529 MobiDBLite consensus disorder prediction 246 342 - -
Cca01g02392 529 Pfam Paired amphipathic helix repeat 98 142 IPR003822 GO:0006355
Cca01g02392 529 Pfam Paired amphipathic helix repeat 394 438 IPR003822 GO:0006355
Cca01g02392 529 Pfam Paired amphipathic helix repeat 185 228 IPR003822 GO:0006355
Cca01g02392 529 PANTHER SIN3B-RELATED 64 457 IPR039774 GO:0003714
Cca01g02392 529 SUPERFAMILY PAH2 domain 376 441 IPR036600 GO:0006355
Cca01g02392 529 Gene3D Paired amphipathic helix 159 232 IPR036600 GO:0006355
Cca01g02392 529 MobiDBLite consensus disorder prediction 458 513 - -
Cca01g02392 529 SUPERFAMILY PAH2 domain 75 144 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02392 Cca-Chr1 52682688 52716618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02392 72 180 WRKY Transcription Factor Family AT4G12020 51.376 1.57e-24 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca01g02392 PAH 3.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02392 K11644 - ccaj:109792823 765.763