Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02389 ATGGCTTTGAATACGATGCTTCAATCATGGCTTCATACGAGCCTTGTTTTTCTTTTACTTCTGCACAGTTTGTCAATACCAACCTGTCATAGCCAGACCAGCAATTTTCCTCCTCAGAACATTGAAACTTTCTATCCAAATGAAACTTCAGccacagcaccagcacagccacaacagcaaccaccaccaccaccactaccatccacTAACGTAGCACCTAGCCGCGGTTCATCGAACGGTAAGATGGCGAAGGCTGTGGCTGCAACAGCAGCAACCTCCATAGTTGTATGTGGTTTAGTTTTCATTTTGGTTCAAAGGTGCTTGAGGGCAAGAAAGAGAGAGGAGACAAGAAACACTGCTTCTGGGGGAGATACCCGTGTTGTGCCTCAGGGAAACGTGTTTGAGAGAATTGATGGAAATGTGAAGGGCTTGATTGTTGATGAGGATGGTTTGGATGTGATTTACTGGAGAAAGCTTGAAGGGAAGAACTCTAACAAGGATCTTCATAAGGAGGTCTTGAGTAGTCCCAAAAACAAAGAGAAAGAAGTTAAAGAAGATGGACATGATGAAAATCAAGTGAAAAAGTCTAAGTCCATCCAAGAAATTCCTCTGCTTAGAGGGAAATCTTCAACTTCCCACTTGAACATATCTCCAGAAGAGGATGAGCCATATAGATTTTCACCAATTTCTTCTCCTCCTCCTAGTCTTCCTGCATCAGTTGGGGTTGTTATCAAGGGTGTTCAGAAACCAGACTCTCCAATTCAACCATCAACTCCCCCCCCTCCAATTTCACCATCAACACCATCCTCTACTTCTTTTTCGGCAGTTCCGAAAACGAATAATCCTGCACCATCGCCTCCTCCTCCCCCAATCCCAGCTAGAAGGAGTCCAGTACCACCTCCTCCTCCTCCATCTTCAAAACCACCACCTCCTCCCGTTGAAATGCCAGCAATTAAGCAAAGAAACTCTTCAGGAAAAGGAGTGCCAGAAACCAGCAATGATCAAGTGAAGCTGAAGCCTTTGCATTGGGATAAGGTGAATACTAATAATGCTGATCACTCCATGGTATGGGACAAAGTTGATCGTGGCTCTTTCAGGGTTGATCAAGATCTTATGGAGGCTCTCTTCGGTTATGTCGCAACCAACCGAAAATCTCCCAAAGGAAAGAGTCACTCAGCCATTCCAAGCAAGGATGGCTCAGCTCCATCTGCAAAAACTTTCCTTCTTGACCCCAGAAAGTCACAGAACATTGCTATTGTTTTGAAATCTCTTGCAGTCTCACAAAGTGAAATTCTTGATGCACTCACTAATGGTAAGGGCCTCGATGCAGATATCCTTGAAAAGCTTGCTAGAGTTTCCCCAACAGAAGAAGAGCAATCTCTTATCCTTGAATACAAAGGAGACCCAGCAAGACTTGCAGCCGCTGAATCTTTCCTTTATAACATCCTTAAAGCTGTTCCTTCCGCTTTTAAGCGCTTGAATGCCATGCTATTCAGGTTGAACTATGACTCCGAGATTCAAGAAATCAAGGAATCTCTGCAGACCATTGAACTGGGGTGTATGGAGCTTAAAAGCAAGGGACTCTTTGTGAAGCTTCTTGAAGCAGTGCTTAAGGCAGGAAACCGAATGAATGCAGGAACTGCAAGAGGTAATGCTCAAGCTTTCAATTTGGCTTCTCTTAGAAAGCTCTCTGATGTCAAGAGCACCAATGGAAAAACCACATTACTTCACTTTGTGGTTGAAGAAGTAGTCCGTTCTGAGGGAAAACGGGTCGCTCTTAACCGCAATGGCAGTCTGagcagtagcagcagcaggggaagcagcagcaACGGAAACTATGAGAACAATGCCGCTTCAAATGAACTGATTGAGAGGGAATATGTAACACTAGGATTGCCAATTGTAGGAGGGATCAGTTCTGAGTTCTCCAATGTCAAGAAAGCGGCACAAATAGATTATAGAAATTTGGATGGTTCAATCTCAGCCCTCTCAACCCGGTTAGTTGGAATTCAAGAACTTGATTCCTTGTGTGGAAATGGTGAAGGAGGATATTTTGTGAAAGAAATGGATCACTTTCTTGGAAATGCTGAGGAAGAGTTGAAATTAGTGAGGGAGAAGCAAACAAGTGTGTTGCAGCTTATCAAGAAAACAACACAATATTATCAAGGAGGAGCTTCAAAAGGGACTGCAGAAGACAATCTTCAATTGTTTGTCATAGTGAAGGATTTTCTGGGAATGGTTGACCATGCTTGCATTGAGATTGCACGGGAAATGCAGAAGAGGATGACTCCCAAGCGAATTTCTGGGTAG 2310 0.4182 MALNTMLQSWLHTSLVFLLLLHSLSIPTCHSQTSNFPPQNIETFYPNETSATAPAQPQQQPPPPPLPSTNVAPSRGSSNGKMAKAVAATAATSIVVCGLVFILVQRCLRARKREETRNTASGGDTRVVPQGNVFERIDGNVKGLIVDEDGLDVIYWRKLEGKNSNKDLHKEVLSSPKNKEKEVKEDGHDENQVKKSKSIQEIPLLRGKSSTSHLNISPEEDEPYRFSPISSPPPSLPASVGVVIKGVQKPDSPIQPSTPPPPISPSTPSSTSFSAVPKTNNPAPSPPPPPIPARRSPVPPPPPPSSKPPPPPVEMPAIKQRNSSGKGVPETSNDQVKLKPLHWDKVNTNNADHSMVWDKVDRGSFRVDQDLMEALFGYVATNRKSPKGKSHSAIPSKDGSAPSAKTFLLDPRKSQNIAIVLKSLAVSQSEILDALTNGKGLDADILEKLARVSPTEEEQSLILEYKGDPARLAAAESFLYNILKAVPSAFKRLNAMLFRLNYDSEIQEIKESLQTIELGCMELKSKGLFVKLLEAVLKAGNRMNAGTARGNAQAFNLASLRKLSDVKSTNGKTTLLHFVVEEVVRSEGKRVALNRNGSLSSSSSRGSSSNGNYENNAASNELIEREYVTLGLPIVGGISSEFSNVKKAAQIDYRNLDGSISALSTRLVGIQELDSLCGNGEGGYFVKEMDHFLGNAEEELKLVREKQTSVLQLIKKTTQYYQGGASKGTAEDNLQLFVIVKDFLGMVDHACIEIAREMQKRMTPKRISG 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02389 769 MobiDBLite consensus disorder prediction 203 217 - -
Cca01g02389 769 MobiDBLite consensus disorder prediction 56 70 - -
Cca01g02389 769 SUPERFAMILY Formin homology 2 domain (FH2 domain) 299 761 - -
Cca01g02389 769 MobiDBLite consensus disorder prediction 383 406 - -
Cca01g02389 769 Pfam Formin Homology 2 Domain 332 747 IPR015425 -
Cca01g02389 769 PANTHER FORMIN-LIKE PROTEIN 1 766 - -
Cca01g02389 769 PANTHER FORMIN-RELATED 1 766 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cca01g02389 769 MobiDBLite consensus disorder prediction 280 316 - -
Cca01g02389 769 Gene3D Formin, FH2 domain 348 767 IPR042201 -
Cca01g02389 769 MobiDBLite consensus disorder prediction 167 196 - -
Cca01g02389 769 MobiDBLite consensus disorder prediction 50 79 - -
Cca01g02389 769 SMART it6_source 325 762 IPR015425 -
Cca01g02389 769 ProSiteProfiles Formin homology-2 (FH2) domain profile. 328 769 IPR015425 -
Cca01g02389 769 MobiDBLite consensus disorder prediction 253 267 - -
Cca01g02389 769 MobiDBLite consensus disorder prediction 167 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02389 Cca-Chr1 52648596 52651749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02389 10 761 FH2 protein (formin) Gene Family AT1G70140 46.124 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02389 - - gmx:100783219 1053.89