Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02388 ATGGACTCTAACGGTGTCGTTTCTTGGCCGAGGATGCCGGAGAACATGGACGCTTTCGCTCTCTCACCCGAACAATCCCAAGAGGTTCATGTTTTAGCCGTTGATGACAGCCTCGTTGATCGCAAGGTCATCGAACGTTTACTCAAAGTCCTTGCTTGCAAAGTTACGGCTGTGGATAGCGGGCTCAGAGCACTGCAATTACTTGGACTATTGGACGAGCAGAAAATGGCTTCTGAAACTTTTGTTGGTTTAAAGGTGGATCtaattatcacagactactgtatgccaggaatgaccggttatgaactgctcaagAAAATAAAGGAATCGTCCACTTTTAAGGAAACTCCTGTGGTGATTATGTCTTCTGAAAACGTTTTGCCACGCATAGACAGATGTTTGGAGGAGGGTGCAGAGGATTTCATAGTGAAGCCAGTGAAGTTATCTGACGTGAAACGTTTGAAGGATTACATGACAACGAAGGAGGTTAGGGGTGAAAGCCAAGACAGGGAAGGGAACAATTACAAAAGGAAGCTACTAGACACCTCTGATGTGTCACCATCATCACCACCGTCCATTTCCTCATCAACACTTCCATCTTCACCCTCCGTGATTGACTCTCCAATCAGACGGCTTAAAATGACCAGCACTGACTGA 657 0.4247 MDSNGVVSWPRMPENMDAFALSPEQSQEVHVLAVDDSLVDRKVIERLLKVLACKVTAVDSGLRALQLLGLLDEQKMASETFVGLKVDLIITDYCMPGMTGYELLKKIKESSTFKETPVVIMSSENVLPRIDRCLEEGAEDFIVKPVKLSDVKRLKDYMTTKEVRGESQDREGNNYKRKLLDTSDVSPSSPPSISSSTLPSSPSVIDSPIRRLKMTSTD 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02388 218 CDD REC_typeA_ARR 31 154 - -
Cca01g02388 218 ProSiteProfiles Response regulatory domain profile. 30 159 IPR001789 GO:0000160
Cca01g02388 218 MobiDBLite consensus disorder prediction 162 178 - -
Cca01g02388 218 SUPERFAMILY CheY-like 29 154 IPR011006 -
Cca01g02388 218 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 10 204 - -
Cca01g02388 218 Pfam Response regulator receiver domain 31 151 IPR001789 GO:0000160
Cca01g02388 218 MobiDBLite consensus disorder prediction 179 218 - -
Cca01g02388 218 SMART REC_2 29 158 IPR001789 GO:0000160
Cca01g02388 218 MobiDBLite consensus disorder prediction 162 218 - -
Cca01g02388 218 Gene3D - 29 191 - -
Cca01g02388 218 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 204 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02388 Cca-Chr1 52630811 52632254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02388 23 210 Response Regulator Gene Family AT1G59940 61.058 1.96e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca01g02388 Response_reg 3.8e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02388 K14492 - gmx:100527828 333.183