Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02383 ATGAAGCAGCAGGTGCAAATGGATGTTACAGTTCCTTGCTCTGGTGACCTTGTGTCGATAGGAGAAACCGGTGGACATGAATTTTACCGTTCCTCGCTGGTGACCTTCTTTAAAAGGGTTTTATTTCTGGTGACGTTGTGCATATGGAAGGGTTTTTCTCTTTGTTCCTCACTCTGTGGTGATGATTCTTCATTGCTAGGATCTATAACAGTGCACATAATGGAAGCTTTGCAAACAAATTTAGATAGAAGATCAAAGCAGTATAAAGACCCTGCATTGACATATCTTTTTCTCATGAACAATGTTCATTATGTTGTCAGATTAGTTTGGAGGTCTGAAGACAAGGATTTGCTAAGAAATACTTGGGAAAAAGTGGCAATTGAGAAAGATGCTACAAAGACTGCAGTTACAGATGGAACTGTCCATCCTTTGACACACACTGTCATTAACTATCTATCAATCCACCTTGAAACAACTTTTTCTGAGCAGTATAAAGACCCTGCATTAACACATGTTTTTCTCATGAACAATACTCATTATATTATAAGATGTGTTTGGAGGTCTGATGCCAAGGATTTGCTAGGGGATGATTGA 594 0.3872 MKQQVQMDVTVPCSGDLVSIGETGGHEFYRSSLVTFFKRVLFLVTLCIWKGFSLCSSLCGDDSSLLGSITVHIMEALQTNLDRRSKQYKDPALTYLFLMNNVHYVVRLVWRSEDKDLLRNTWEKVAIEKDATKTAVTDGTVHPLTHTVINYLSIHLETTFSEQYKDPALTHVFLMNNTHYIIRCVWRSDAKDLLGDD 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02383 197 Gene3D Exocyst complex component Exo70 125 156 - -
Cca01g02383 197 Gene3D Exocyst complex component Exo70 40 124 - -
Cca01g02383 197 PANTHER EXOCYST COMPLEX PROTEIN EXO70 59 122 IPR004140 GO:0000145|GO:0006887
Cca01g02383 197 PANTHER EXOCYST COMPLEX PROTEIN EXO70 161 197 IPR004140 GO:0000145|GO:0006887
Cca01g02383 197 PANTHER EXOCYST COMPLEX COMPONENT EXO70A1-LIKE 59 122 - -
Cca01g02383 197 PANTHER EXOCYST COMPLEX PROTEIN EXO70 126 154 IPR004140 GO:0000145|GO:0006887
Cca01g02383 197 Pfam Exo70 exocyst complex subunit 61 124 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cca01g02383 197 Pfam Exo70 exocyst complex subunit 156 197 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cca01g02383 197 SUPERFAMILY Cullin repeat-like 126 197 IPR016159 -
Cca01g02383 197 Gene3D Exocyst complex component Exo70 157 197 - -
Cca01g02383 197 PANTHER EXOCYST COMPLEX COMPONENT EXO70A1-LIKE 126 154 - -
Cca01g02383 197 SUPERFAMILY Cullin repeat-like 60 124 IPR016159 -
Cca01g02383 197 PANTHER EXOCYST COMPLEX COMPONENT EXO70A1-LIKE 161 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02383 Cca-Chr1 52553959 52560815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02383 48 197 EXO70 exocyst subunit family AT5G03540 33.014 1.77e-23 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02383 K07195 - gmx:100813987 94.3597