Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02380 ATGATTGTTACTCGTTCAGCCTTGATGCTCCATCTCCAAAACCCACCAATTCGCTACCACTTCTTCTCCCACCTCAACCATCCTCACATCACATTCTTCAAACCCTCTTCCCCTTCTCTATTCAAACCTCGCCCCTTCTCTCAAACCACTCCACGCCTAACACAAACCAGACCCTTTGTGATTGcatcatcatcatcatcatcaCAAGGTTCTAAGGGCAGGGACACTTTCTTTGCACAGGAAAACGTTTCGTGGACTTCGCTCGGTCTCTCCGATACCGTTTCTCGAGCGCTTTCTAACGTTGGCCTCAACAGACCCTCTCTCGTTCAGGCTTCTTCTGTACCATCTGTGCTGTCAGGAAAGGATGTTATTATTGCCGCAGAGACCGGGAGTGGTAAGACATACAGTTACCTAGTTCCTCTAATTGATAAACTTAGGGGCACCCAGGAACATTCTCTACATGCCGAGCCTGATCAAGAAGTGACCTTGCCGCAGAAAGTTCTGCTCGTTCTTTGTCCGAATGTGCAACTTTGTGAGCAGGTAGTTAGGATGGCTAACAGTCTCTGTAGAGATGATGGTGAGACGATAGTTAGTGTGGCAGCCATTTGTGGCAAACAGGGATGGCCAATTCGGGAACCTGATATCATTGTGACAACACCTGCTGCCCTTCTGAATTATGTTGACCTTGATAGAACCCGCCGCATGGAATTTATGCGTGGTGTTAAATATGTGGTGTTTGATGAAGCCGATATGCTTCTCTGTGGGAGTTTCCAGAATAAAGTAATCCGTCTGATAAACTTGCTCCGCTTCGATGAAAAACTCTTGTCTCGATCAAAACAATCAGCAGCAGAGTTTCCAATGAAACAGGAATTTTCCTTGTCATCAGCAGATGCTTTTGAAGGTGAAGAACTTCAAAATGAAGCCACCACAGAAGAGGatgacaatgataaagatgatattgtagatattgataatgaAGCTGAATCTGTCAAACAAAGAGACTGGAAGAGAGTGAGGAAAAATTATAAGCGTAGTAAACAGTATATTTTTGTTGCTGCTACACTTCCAGTGAATGGAAAGAAAACAGCTGGAGGGATATTGAAATACATGTTTCCTGATGCTGAGTGGGTTTATGGAAACTATCTTCATTGTCACAATCCAAGGTTGGAGCAGAAGTGGATAGAAGTTACAGTTGATACTCAAGTGGATGAACTCATAAAGGCTGTGAATCACAGTTTCAGATCTGAAGATTTGGATAATGCTGGTGGCATTCACAGAACAATGGTGTTTGCCAACACTGTTGAGGCTGTTGAAGCTGTGGCAAAGATATTAATCCGATCTGGAATTGAATGTTCACGTTATCATAAGAATTGCACATTGGAGGAGCGAGCACTGACCTTAGCTGATTTTCATGAGAAAGGTGGTGTTCTTGTATGTACTGATGCTGCTGCTCGTGGCGTTGATATTCCAAATGTTTTACATGTTATTCAGGCGGATTTTGCTACTTCTGCTGTAGACTTTTTGCATAGGGTTGGTCGTACAGCTAGAGCCGGTCAAATTGGACTTGTTACTAGCATGTACACTGAATCCAACAGGGAGCTTGTTGATGCCGTTCGTCGGGCAGGGGAACTTGGTCAACCTGTGGAAACTGCATTTAGCAGGAAAAGAAGCTTCCGCAACAAGCTCAAGAAGAGGGGTACTAATAAAGTAAGAGATTCAGCAACTATTAAAGAGAGTGTTCTAGGATGA 1749 0.4277 MIVTRSALMLHLQNPPIRYHFFSHLNHPHITFFKPSSPSLFKPRPFSQTTPRLTQTRPFVIASSSSSSQGSKGRDTFFAQENVSWTSLGLSDTVSRALSNVGLNRPSLVQASSVPSVLSGKDVIIAAETGSGKTYSYLVPLIDKLRGTQEHSLHAEPDQEVTLPQKVLLVLCPNVQLCEQVVRMANSLCRDDGETIVSVAAICGKQGWPIREPDIIVTTPAALLNYVDLDRTRRMEFMRGVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKLLSRSKQSAAEFPMKQEFSLSSADAFEGEELQNEATTEEDDNDKDDIVDIDNEAESVKQRDWKRVRKNYKRSKQYIFVAATLPVNGKKTAGGILKYMFPDAEWVYGNYLHCHNPRLEQKWIEVTVDTQVDELIKAVNHSFRSEDLDNAGGIHRTMVFANTVEAVEAVAKILIRSGIECSRYHKNCTLEERALTLADFHEKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRVGRTARAGQIGLVTSMYTESNRELVDAVRRAGELGQPVETAFSRKRSFRNKLKKRGTNKVRDSATIKESVLG 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02380 582 Gene3D - 61 370 IPR027417 -
Cca01g02380 582 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 55 557 - -
Cca01g02380 582 SMART helicmild6 438 518 IPR001650 -
Cca01g02380 582 CDD SF2_C_DEAD 389 527 - -
Cca01g02380 582 Pfam Helicase conserved C-terminal domain 425 518 IPR001650 -
Cca01g02380 582 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 401 566 IPR001650 -
Cca01g02380 582 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 114 373 IPR014001 -
Cca01g02380 582 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 22 55 557 - -
Cca01g02380 582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 530 IPR027417 -
Cca01g02380 582 Gene3D - 390 582 IPR027417 -
Cca01g02380 582 CDD DEADc 96 275 - -
Cca01g02380 582 Pfam DEAD/DEAH box helicase 109 275 IPR011545 GO:0003676|GO:0005524
Cca01g02380 582 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 83 111 IPR014014 GO:0003724
Cca01g02380 582 SMART ultradead3 102 392 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02380 Cca-Chr1 52428701 52436373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02380 332 544 Eukaryotic Initiation Factors Gene Family AT5G11200 25.820 5.37e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02380 - - gmx:100789323 994.571