Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02373 ATGAATGCGGAACCACCGCCGGCGCTCCTCATGTCGGTTTCCTGCATCTCCGACTACGACCTCCTCTGCGCCGAGGACACATCCGGAATCCTCTCTGGAGATTCGCCGGAATGCTCCTCCGACATCGACTCCTCTccgccgcctccgtcgccgccgtcgacgacgGAGGATTGTTCCATCGCAAGCTTCATCGAGCACGAGCGCAACTTCGTCCCTGGATTCGAGTACCTGTCGAGGTTCCAATCTCGCTCCCTCGACGCCAACGCCAGAGAAGAATCCGTTGCATGGATTCTCAAGGTTCACGCGTATTACGGCTTTCAACCTTTGACGGCGTACCTTGCCGTCAATTATATGGATCGGTTTTTGGATTCTCGCCGGTTGCCGCAAACAAATGGGTGGCCTCTGCAACTCCTATCTGTTGCATGTTTGTCTTTGGCGGCAAAGATGGAGGAACCTCTGGTTCCATCTCTCCTAGACCTTCAGATAGAAGGTGCCAAGTACATATTTGAGCCGAGAACAATTCGTAGGATGGAACTACTTGTTCTGGGTGTCTTGGATTGGAGGTTAAGATCAGTAACCCCACTTAGCTTCCTTGCCTTCTTTGCTTGCAAGGTGGATTCAACTGGAACTTTAACCGGGTTCCTCATTTCCCGGGCTACAGAAATCATCGTATCTAATATCCAAGAGGCTAGCTTTCTTGCATACAGGCCATCATGCATTGCTGCTGCAGCCATACTCTCTGCTGCTCATGAGATTCCTAATTGGTCTGCGGTTAAACCTGAGCATGCTGAGTCATGGTGTGAGGGACTAAGAAAAGAAAAAGTTATAGGGTGCTACGAGTTGATGCAAGAACTTGTGATTAACAATAACCGCAGGAATCTCCCTACTAAAGTGTTGCCGCAGCTGCGAGTTACAACTCGGACCCGAATgagGAAGAAGTTAGTTGCGGACGTGAATTCAAAGTTTGAATTGATTATAGCTGAAATAGATGAAAGATGGTGGAGCAGTTCTGTAGAGATTGGGAGAGAGCAGCATCACTGCTTCTTCAACACACCGCGTTCCTTTGATGGGATACCCTCAACAGTAAAAACACAATTGAAGGGCAATAAGTTGAAGTTTGGCTACAATTTGTGGACTTTTTTTGTGGGAACTGGCACGTGTGCAGACGGTTCTGATGCGTGCCAATTAAGTGTAATCTCCTTCACTTGCGCTCTCTCACACAACCACGTCTACCCTAACCCAATTCCCGAATTCGCAAAATCCGAAACTCGCAAGTTCCAAACTCAACTCTTTCGGAAGCTTTCCGAGAATGTGGACGAGTTCGGGGACGACCTTGATCAGGTTGTAGCCGTTTGCGCTCAGATATTTAGTGAGTTTTTGCACAAGGATTATGGAGGTCCTGGAACATTGTTGGTGGAGCCATTCACGGATATGATGGTTGCTCTAAAAAAGAAGAAATTACCGGGAGCAGCTCTGGCTGCAAGAGCGTCACTCTTATGGGCACAAAATTATGTTGATAAGGATTGGGAAGTTTGGAACTCAAAACTAAAATGA 1554 0.4653 MNAEPPPALLMSVSCISDYDLLCAEDTSGILSGDSPECSSDIDSSPPPPSPPSTTEDCSIASFIEHERNFVPGFEYLSRFQSRSLDANAREESVAWILKVHAYYGFQPLTAYLAVNYMDRFLDSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPSLLDLQIEGAKYIFEPRTIRRMELLVLGVLDWRLRSVTPLSFLAFFACKVDSTGTLTGFLISRATEIIVSNIQEASFLAYRPSCIAAAAILSAAHEIPNWSAVKPEHAESWCEGLRKEKVIGCYELMQELVINNNRRNLPTKVLPQLRVTTRTRMRKKLVADVNSKFELIIAEIDERWWSSSVEIGREQHHCFFNTPRSFDGIPSTVKTQLKGNKLKFGYNLWTFFVGTGTCADGSDACQLSVISFTCALSHNHVYPNPIPEFAKSETRKFQTQLFRKLSENVDEFGDDLDQVVAVCAQIFSEFLHKDYGGPGTLLVEPFTDMMVALKKKKLPGAALAARASLLWAQNYVDKDWEVWNSKLK 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02373 517 ProSitePatterns Cyclins signature. 90 121 IPR006671 -
Cca01g02373 517 SUPERFAMILY Cyclin-like 174 287 IPR036915 -
Cca01g02373 517 Pfam Cyclin, C-terminal domain 192 294 IPR004367 -
Cca01g02373 517 PANTHER CYCLINS 22 311 IPR039361 -
Cca01g02373 517 SUPERFAMILY Cyclin-like 60 189 IPR036915 -
Cca01g02373 517 CDD CYCLIN 96 182 IPR013763 -
Cca01g02373 517 MobiDBLite consensus disorder prediction 33 56 - -
Cca01g02373 517 SMART cyclin_7 95 183 IPR013763 -
Cca01g02373 517 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 22 311 - -
Cca01g02373 517 Gene3D - 62 279 - -
Cca01g02373 517 SMART Cyclin_C_2 192 310 IPR004367 -
Cca01g02373 517 Pfam Cyclin, N-terminal domain 61 189 IPR006671 -
Cca01g02373 517 Gene3D - 73 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02373 Cca-Chr1 52351818 52367290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02373 9 307 Core Cell Cycle Gene Families AT1G70210 64.356 1.00e-128 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02373 K18810 - gmx:100818190 535.798