Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02368 ATGCCATTTGGTTTGGTCTCAGCATGGAACAAGCGTAGAAGAAGCATGTCTCAAGATCATTCAGACCCTTGGATTTATAAACCTGCAGAGTTTTGGCAGCTTGAAGATCTAGCACCACAACCCAGAAAACGGAGGCATGCATCATCTGTTTTCACACTCAAGGAGATGGAAGAGGCAACATGTTCATTCAGTGATGGTAATCTGCTTGGAAAAGGAGGATTTGGTAGGGTCTACAGGGGCACTTTGAAGTCAGGAGAGGTTGTAGCAATCAAGAAAATGGAGCTGCCAGCGATTAAAGCAGCAGAGGGGGAGCGCGAATTCCGTGTAGAGGTTGACATATTAAGCAGACTTGACCACCCAAATCTTGTTTCTTTGATAGGATACTGTGCTGATGGGAAGCAAAGGTTCCTGGTTTATGAATATATGCATAATGGGAACCTGCAAGATCATTTGAATGGAATCGGCGAAAGAAGAATGGATTGGCCTCTGAGACTCAAAGCCGCATTAGGAGCTGCAAAAGGGCTTGCTTATCTTCATTCAAGTTCTTGTCTTGGAATTCCTATTGTTCATAGGGATTTCAAATCCACCAATGTTCTTTTAGATGCCAATTTTGAAGCAAAGATATCTGATTTTGGGCTTGCTAAACTAATGCCAGAAGGACAAGAAACACATGTGACTGCCAGAGTACTTGGTACCTTCGGCTATTTTGATCCTGAGTATACATCGACTGGAAAACTTACTCTACAAAGTGATGTTTATGCTTTTGGGGTTGTTCTTCTCGAGCTTCTGACAGGACGTCGAGCTGTAGATCTAAACCAGGGTCCAAATGATCAAAACCTTGTACTACAGGTGAGACACTTATTGAATGACCGCAAGAAGCTGCGTAAGGTGATAGATCCAGAGATGGCTCGAAATTCTTACACCATTGAGTCTATAGTCATGTTTGCCAATCTGGCATCACGATGTGTTCGTAGTGAGAGTAATGAGAGACCTTCAATGGTAGATTGTGTCAGAGAAATCCAAATGATTATCTATACAAATTCAAAGGGATTGGGAATGGTTATGCATAGCTTGAGAATGGTCTAA 1086 0.4245 MPFGLVSAWNKRRRSMSQDHSDPWIYKPAEFWQLEDLAPQPRKRRHASSVFTLKEMEEATCSFSDGNLLGKGGFGRVYRGTLKSGEVVAIKKMELPAIKAAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKQRFLVYEYMHNGNLQDHLNGIGERRMDWPLRLKAALGAAKGLAYLHSSSCLGIPIVHRDFKSTNVLLDANFEAKISDFGLAKLMPEGQETHVTARVLGTFGYFDPEYTSTGKLTLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVLQVRHLLNDRKKLRKVIDPEMARNSYTIESIVMFANLASRCVRSESNERPSMVDCVREIQMIIYTNSKGLGMVMHSLRMV 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02368 361 CDD STKc_IRAK 69 341 - -
Cca01g02368 361 SUPERFAMILY Protein kinase-like (PK-like) 49 346 IPR011009 -
Cca01g02368 361 Gene3D Transferase(Phosphotransferase) domain 1 142 352 - -
Cca01g02368 361 Pfam Protein kinase domain 64 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02368 361 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 1 361 - -
Cca01g02368 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Cca01g02368 361 PANTHER OS01G0750732 PROTEIN 1 361 - -
Cca01g02368 361 ProSiteProfiles Protein kinase domain profile. 63 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g02368 361 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
Cca01g02368 361 Gene3D Phosphorylase Kinase; domain 1 34 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02368 Cca-Chr1 52293385 52296625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02368 50 344 Receptor kinase-like Gene Family AT3G58690 47.000 5.55e-90 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Cca01g02368 Pkinase 6.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02368 - - gmx:100820613 686.026